HL_1NJP_009

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1NJP|1|0|G|319, 1NJP|1|0|A|320, 1NJP|1|0|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3406

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

1NJP|1|0|C|316
1NJP|1|0|U|317
1NJP|1|0|G|318
1NJP|1|0|G|319
1NJP|1|0|A|320
1NJP|1|0|A|321
1NJP|1|0|A|322
1NJP|1|0|G|323

Current chains

Chain 0

23S ribosomal RNA

Nearby chains