HL_1NJP_011

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1NJP|1|0|G|340, 1NJP|1|0|A|341, 1NJP|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.5442

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

1NJP|1|0|G|338
1NJP|1|0|U|339
1NJP|1|0|G|340
1NJP|1|0|A|341
1NJP|1|0|G|342
1NJP|1|0|A|343
1NJP|1|0|G|344
1NJP|1|0|U|345
1NJP|1|0|C|346

Current chains

Chain 0

23S ribosomal RNA

Nearby chains