HL_1NJP_027

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_027 not in the Motif Atlas

Homologous match to HL_7A0S_027

Geometric discrepancy: 0.3487

The information below is about HL_7A0S_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

1NJP|1|0|G|989
1NJP|1|0|A|990
1NJP|1|0|A|991
1NJP|1|0|A|992
1NJP|1|0|C|993
1NJP|1|0|A|994
1NJP|1|0|A|995
1NJP|1|0|C|996

Current chains

Chain 0

23S ribosomal RNA

Nearby chains