Motif HL_47171.1 Version HL_47171.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 1-8 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_7A0S_027 | 7A0S | 0.2811 | 0 | X | LSU rRNA | G | 989 | A | 990 | A | 991 | A | 992 | C | 993 | A | 994 | A | 995 | C | 996 | cWW |
| 2 | HL_8B0X_058 | 8B0X | 0.3091 | 0 | a | LSU rRNA | G | 980 | A | 981 | A | 982 | A | 983 | C | 984 | A | 985 | A | 986 | C | 987 | cWW |
| 3 | HL_4WF9_028 | 4WF9 | 0.2974 | 0 | X | LSU rRNA | G | 1022 | A | 1023 | A | 1024 | A | 1025 | C | 1026 | A | 1027 | G | 1028 | C | 1029 | cWW |
| 4 | HL_4V9F_029 | 4V9F | 0.2856 | 0 | 0 | LSU rRNA | G | 1076 | G | 1077 | A | 1078 | A | 1079 | C | 1080 | A | 1081 | A | 1082 | C | 1083 | cWW |
| 5 | HL_9E6Q_028 | 9E6Q | 0.2821 | 0 | 1 | LSU rRNA | G | 1099 | G | 1100 | A | 1101 | A | 1102 | C | 1103 | A | 1104 | A | 1105 | C | 1106 | cWW |
| 6 | HL_9DFE_026 | 9DFE | 0.2526 | 0 | 1A | LSU rRNA | G | 978 | G | 979 | A | 980 | A | 981 | C | 982 | A | 983 | A | 984 | C | 985 | cWW |
| 7 | HL_8GLP_029 | 8GLP | 0.0000 | 0 | L5 | LSU rRNA | G | 1886 | G | 1887 | A | 1888 | U | 1889 | G | 1890 | A | 1891 | A | 1892 | C | 1893 | cWW |
| 8 | HL_8OI5_025 | 8OI5 | 0.0587 | 0 | 1 | LSU rRNA | G | 1144 | G | 1145 | A | 1146 | U | 1147 | G | 1148 | A | 1149 | A | 1150 | C | 1151 | cWW |
| 9 | HL_8P9A_138 | 8P9A | 0.0758 | 0 | AR | LSU rRNA | G | 1148 | G | 1149 | A | 1150 | U | 1151 | G | 1152 | A | 1153 | A | 1154 | C | 1155 | cWW |
| 10 | HL_9AXU_024 | 9AXU | 0.1574 | 0 | 2 | LSU rRNA | G | 1179 | G | 1180 | A | 1181 | U | 1182 | G | 1183 | A | 1184 | A | 1185 | C | 1186 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GGAUGAAC | 4 |
| GGAACAAC | 3 |
| GAAACAAC | 2 |
| GAAACAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAUGAA | 4 |
| GAACAA | 3 |
| AAACAA | 2 |
| AAACAG | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (10)
- Basepair signature
- cWW-F-F-F-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.22 | Max 0.41
Coloring options: