HL_1NJP_029

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_029 not in the Motif Atlas

Homologous match to HL_7A0S_029

Geometric discrepancy: 0.3218

The information below is about HL_7A0S_029

Detailed Annotation

GNRA related

Broad Annotation

T-loop

Motif group

HL_92598.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

13

Unit IDs

1NJP|1|0|C|1103
1NJP|1|0|G|1104
1NJP|1|0|U|1105
1NJP|1|0|A|1106
1NJP|1|0|A|1107
1NJP|1|0|U|1108
1NJP|1|0|A|1109
1NJP|1|0|G|1110

Current chains

Chain 0

23S ribosomal RNA

Nearby chains