Motif HL_92598.1 Version HL_92598.1 of this group appears in releases 4.1 to 4.6
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 2-7 | 3-5 | 3-6 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5H9F_001 | 5H9F | 0.4301 | 1 | L | crRNA (61-MER) | G | 50 | C | 51 | G | 52 | C | 54 | A | 55 | G | 56 | C | 57 | cWW | ncWw | ||||
| 2 | HL_6CF2_001 | 6CF2 | 0.1995 | 1 | G | RNA (35-MER) | A | 13 | C | 14 | U | 15 | C | 17 | G | 18 | G | 19 | U | 20 | cWW | |||||
| 3 | HL_9E6Q_025 | 9E6Q | 0.0000 | 2 | 1 | LSU rRNA | G | 896 | C | 897 | A | 898 | A | 900 | A | 901 | A | 903 | C | 904 | cWW | cWW | tSW | |||
| 4 | HL_8GLP_024 | 8GLP | 0.0762 | 2 | L5 | LSU rRNA | G | 1627 | C | 1628 | G | 1629 | A | 1631 | A | 1632 | A | 1634 | C | 1635 | cWW | cWW | tSW | |||
| 5 | HL_9AXU_019 | 9AXU | 0.0887 | 2 | 2 | LSU rRNA | G | 942 | C | 943 | G | 944 | A | 946 | A | 947 | A | 949 | C | 950 | cWW | cWW | tSW | |||
| 6 | HL_8P9A_133 | 8P9A | 0.1080 | 2 | AR | LSU rRNA | G | 910 | C | 911 | G | 912 | A | 914 | A | 915 | A | 917 | C | 918 | cWW | cWW | tSW | |||
| 7 | HL_8OI5_020 | 8OI5 | 0.1105 | 2 | 1 | LSU rRNA | G | 906 | C | 907 | G | 908 | A | 910 | A | 911 | A | 913 | C | 914 | cWW | cWW | tSW | |||
| 8 | HL_4WZD_250 | 4WZD | 0.6838 | 0 | 3L | tRNA | U | 47||||P_1 | C | 48||||P_1 | A | 49||||P_1 | U | 50||||P_1 | C | 51||||P_1 | G | 52||||P_1 | A | 53||||P_1 | cWW | ncSW | ||||
| 9 | HL_2D6F_005 | 2D6F | 0.8069 | 2 | tRNA anticodon loop | F | tRNA | G | 931 | C | 932 | U | 933 | G | 936 | G | 937 | A | 938 | C | 939 | cWW | cWW | |||
| 10 | HL_4V9F_049 | 4V9F | 0.8273 | 1 | GNRA related | 0 | LSU rRNA | C | 1916 | G | 1917 | U | 1918 | C | 1920 | A | 1921 | A | 1922 | G | 1923 | cWW | ntSH | |||
| 11 | HL_9E6Q_047 | 9E6Q | 0.8034 | 1 | GNRA related (H) | 1 | LSU rRNA | G | 1996 | G | 1997 | U | 1998 | C | 2000 | A | 2001 | A | 2002 | C | 2003 | cWW | ||||
| 12 | HL_7A0S_029 | 7A0S | 0.9328 | 1 | GNRA related | X | LSU rRNA | C | 1103 | G | 1104 | U | 1105 | A | 1107 | U | 1108 | A | 1109 | G | 1110 | cWW | ntSH | |||
| 13 | HL_6GYV_003 | 6GYV | 0.8131 | 1 | A | Lariat-capping ribozyme | G | 103 | G | 104 | C | 106 | G | 107 | A | 108 | U | 109 | C | 110 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GCGAAAGAC | 4 |
| GCGCCAGC | 1 |
| ACUUCGGU | 1 |
| GCAAAA(OMG)AC | 1 |
| UCAUCGA | 1 |
| GCUUUGGAC | 1 |
| CGUACAAG | 1 |
| GGUACAAC | 1 |
| CGUAAUAG | 1 |
| GGACGAUC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CGAAAGA | 4 |
| GUACAA | 2 |
| CGCCAG | 1 |
| CUUCGG | 1 |
| CAAAA(OMG)A | 1 |
| CAUCG | 1 |
| CUUUGGA | 1 |
| GUAAUA | 1 |
| GACGAU | 1 |
- Annotations
-
- (9)
- GNRA related (2)
- tRNA anticodon loop (1)
- GNRA related (H) (1)
- Basepair signature
- cWW-F-F-F-F-F
- Heat map statistics
- Min 0.04 | Avg 0.57 | Max 0.96
Coloring options: