HL_1NJP_039

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1NJP|1|0|A|1630, 1NJP|1|0|A|1632, 1NJP|1|0|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_039 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1803

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1NJP|1|0|C|1628
1NJP|1|0|G|1629
1NJP|1|0|A|1630
1NJP|1|0|C|1631
1NJP|1|0|A|1632
1NJP|1|0|C|1633
1NJP|1|0|A|1634
1NJP|1|0|G|1635

Current chains

Chain 0

23S ribosomal RNA

Nearby chains