HL_1NJP_078

3D structure

PDB id

1NJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

The crystal structure of the 50S Large ribosomal subunit from Deinococcus radiodurans complexed with a tRNA acceptor stem mimic (ASM)

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1NJP|1|0|A|1081, 1NJP|1|0|G|1082, 1NJP|1|0|C|1083

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NJP_078 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.4191

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1NJP|1|0|C|1075
1NJP|1|0|U|1076
1NJP|1|0|U|1077
1NJP|1|0|A|1078
1NJP|1|0|G|1079
1NJP|1|0|A|1080
1NJP|1|0|A|1081
1NJP|1|0|G|1082
1NJP|1|0|C|1083
1NJP|1|0|A|1084
1NJP|1|0|G|1085

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain T

GENERAL STRESS PROTEIN CTC