HL_1NKW_012

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUUCGUGAAAC

Length

11 nucleotides

Bulged bases

1NKW|1|0|G|399, 1NKW|1|0|U|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_012 not in the Motif Atlas

Homologous match to HL_7A0S_013

Geometric discrepancy: 0.4372

The information below is about HL_7A0S_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.8

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1NKW|1|0|G|395
1NKW|1|0|U|396
1NKW|1|0|U|397
1NKW|1|0|C|398
1NKW|1|0|G|399
1NKW|1|0|U|400
1NKW|1|0|G|401
1NKW|1|0|A|402
1NKW|1|0|A|403
1NKW|1|0|A|404
1NKW|1|0|C|405

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L31