1NKW Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
HL_1NKW_078 | 1/0/58:67 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_93438.2 | |
HL_1NKW_002 | 1/0/85:95 | No text annotation | homologous HL_7A0S_002 HL_50418.1 | |
HL_1NKW_003 | 1/0/121:126 | No text annotation | homologous HL_4WF9_003 HL_75660.5 | |
HL_1NKW_004 | 1/0/133:138 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_1NKW_005 | 1/0/146:151 | No text annotation | geometric HL_5U3G_001 HL_75660.5 | |
HL_1NKW_069 | 1/0/165:185 | No text annotation | ||
HL_1NKW_006 | 1/0/172:177 | No text annotation | ||
HL_1NKW_079 | 1/0/202:207 | No text annotation | homologous HL_7A0S_007 HL_53890.2 | |
HL_1NKW_008 | 1/0/223:229 | No text annotation | homologous HL_7A0S_008 HL_37369.2 | |
HL_1NKW_009 | 1/0/316:323 | No text annotation | homologous HL_7RQB_010 NA | |
HL_1NKW_010 | 1/0/330:334 | No text annotation | homologous HL_5J7L_143 HL_75660.5 | |
HL_1NKW_070 | 1/0/338:346 | T-loop with unstacked turn | homologous HL_5J7L_144 HL_27670.2 | |
HL_1NKW_012 | 1/0/395:405 | No text annotation | homologous HL_7A0S_013 HL_91503.7 | |
HL_1NKW_013 | 1/0/423:430 | Pseudoknot geometry | homologous HL_5J7L_146 HL_30680.3 | |
HL_1NKW_014 | 1/0/473:478 | GNRA | homologous HL_7RQB_015 NA | |
HL_1NKW_015 | 1/0/498:503 | GNRA | homologous HL_7RQB_016 NA | |
HL_1NKW_016 | 1/0/552:560 | No text annotation | geometric HL_2Y8W_001 HL_81100.2 | |
HL_1NKW_017 | 1/0/575:584 | T-loop with 2 stacked bulged bases | homologous HL_7A0S_018 HL_28252.8 | |
HL_1NKW_072 | 1/0/622:627 | No text annotation | ||
HL_1NKW_019 | 1/0/640:645 | GNRA | homologous HL_7A0S_020 HL_37824.7 | |
HL_1NKW_020 | 1/0/725:732 | No text annotation | ||
HL_1NKW_080 | 1/0/758:765 | No text annotation | ||
HL_1NKW_022 | 1/0/791:799 | No text annotation | geometric HL_6CF2_001 HL_87553.1 | |
HL_1NKW_023 | 1/0/839:844 | No text annotation | geometric HL_7A0S_024 HL_55195.3 | |
HL_1NKW_025 | 1/0/966:973 | GNRA | homologous HL_7A0S_026 HL_37824.7 | |
HL_1NKW_026 | 1/0/989:996 | No text annotation | homologous HL_7A0S_027 HL_42998.2 | |
HL_1NKW_027 | 1/0/1075:1085 | No text annotation | homologous HL_6PRV_001 HL_19210.3 | |
HL_1NKW_028 | 1/0/1103:1110 | No text annotation | homologous HL_7RQB_030 NA | |
HL_1NKW_029 | 1/0/1185:1189 | No text annotation | geometric HL_4WF9_009 HL_81100.2 | |
HL_1NKW_030 | 1/0/1235:1240 | GNRA | homologous HL_7A0S_031 HL_37824.7 | |
HL_1NKW_031 | 1/0/1294:1302 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_28252.8 | |
HL_1NKW_032 | 1/0/1337:1343 | Pseudoknot geometry with 3' bulge | homologous HL_4WF9_033 HL_57176.2 | |
HL_1NKW_033 | 1/0/1376:1381 | GNRA | homologous HL_7RQB_035 NA | |
HL_1NKW_081 | 1/0/1402:1411 | No text annotation | homologous HL_5J7L_168 HL_81545.2 | |
HL_1NKW_035 | 1/0/1466:1476 | Pseudoknot | homologous HL_7A0S_036 HL_93135.1 | |
HL_1NKW_036 | 1/0/1508:1514 | No text annotation | homologous HL_7A0S_037 HL_39243.1 | |
HL_1NKW_037 | 1/0/1549:1554 | No text annotation | geometric HL_7RQB_011 NA | |
HL_1NKW_038 | 1/0/1628:1635 | No text annotation | homologous HL_7A0S_040 HL_89567.2 | |
HL_1NKW_039 | 1/0/1647:1652 | No text annotation | homologous HL_7RQB_041 NA | |
HL_1NKW_040 | 1/0/1708:1713 | UNCG | homologous HL_7A0S_042 HL_34617.5 | |
HL_1NKW_041 | 1/0/1731:1735 | No text annotation | geometric HL_4V88_198 NA | |
HL_1NKW_042 | 1/0/1743:1747 | No text annotation | homologous HL_7A0S_044 HL_80709.3 | |
HL_1NKW_043 | 1/0/1767:1779 | No text annotation | homologous HL_7A0S_045 HL_60266.1 | |
HL_1NKW_044 | 1/0/1797:1803 | GNRA related | homologous HL_5J7L_179 HL_04783.2 | |
HL_1NKW_045 | 1/0/1856:1861 | GNRA | homologous HL_7A0S_047 HL_37824.7 | |
HL_1NKW_074 | 1/0/1894:1901 | No text annotation | ||
HL_1NKW_047 | 1/0/1932:1940 | No text annotation | homologous HL_7A0S_048 HL_20167.2 | |
HL_1NKW_048 | 1/0/2010:2019 | No text annotation | homologous HL_7A0S_049 HL_61996.2 | |
HL_1NKW_049 | 1/0/2188:2197 | No text annotation | ||
HL_1NKW_050 | 1/0/2227:2235 | No text annotation | homologous HL_7A0S_052 HL_85367.2 | |
HL_1NKW_051 | 1/0/2243:2255 | No text annotation | homologous HL_4WF9_050 HL_91939.2 | |
HL_1NKW_052 | 1/0/2282:2292 | No text annotation | ||
HL_1NKW_053 | 1/0/2303:2310 | Pseudoknot geometry | homologous HL_7A0S_055 HL_93324.4 | |
HL_1NKW_054 | 1/0/2334:2341 | No text annotation | geometric HL_7VTI_001 HL_48417.5 | |
HL_1NKW_055 | 1/0/2353:2358 | GNRA | homologous HL_4WF9_054 HL_37824.7 | |
HL_1NKW_056 | 1/0/2383:2392 | No text annotation | homologous HL_4WF9_055 HL_53454.2 | |
HL_1NKW_057 | 1/0/2450:2458 | No text annotation | homologous HL_4WF9_056 HL_32735.2 | |
HL_1NKW_076 | 1/0/2507:2514 | No text annotation | homologous HL_7A0S_060 HL_31585.4 | |
HL_1NKW_059 | 1/0/2530:2536 | No text annotation | homologous HL_7A0S_061 HL_30068.2 | |
HL_1NKW_060 | 1/0/2573:2578 | GNRA | homologous HL_7A0S_062 HL_37824.7 | |
HL_1NKW_061 | 1/0/2637:2642 | GNRA | homologous HL_7RQB_064 NA | |
HL_1NKW_077 | 1/0/2680:2685 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_65794.5 | |
HL_1NKW_063 | 1/0/2725:2739 | No text annotation | homologous HL_7A0S_065 HL_74055.2 | |
HL_1NKW_065 | 1/0/2794:2802 | No text annotation | geometric HL_7RQB_068 NA | |
HL_1NKW_066 | 1/0/2831:2836 | GNRA | geometric HL_5J7L_004 HL_37824.7 | |
HL_1NKW_067 | 1/9/35:51 | No text annotation | ||
HL_1NKW_068 | 1/9/88:93 | GNRA | homologous HL_7A0S_070 HL_37824.7 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
HL_1NKW_001 | No text annotation | ||
HL_1NKW_007 | No text annotation | ||
HL_1NKW_011 | No text annotation | ||
HL_1NKW_071 | No text annotation | ||
HL_1NKW_018 | No text annotation | ||
HL_1NKW_021 | No text annotation | ||
HL_1NKW_024 | No text annotation | ||
HL_1NKW_073 | No text annotation | ||
HL_1NKW_034 | No text annotation | ||
HL_1NKW_046 | No text annotation | ||
HL_1NKW_075 | No text annotation | ||
HL_1NKW_058 | tRNA anticodon loop | ||
HL_1NKW_062 | No text annotation | ||
HL_1NKW_064 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
IL_1NKW_001 | 1/0/24:30, 1/0/520:526 | Triple sheared with non-canonical cWW | homologous IL_7A0S_001 IL_04021.2 | |
IL_1NKW_002 | 1/0/36:37, 1/0/454:456 | Single bulged A | homologous IL_7A0S_002 IL_31462.6 | |
IL_1NKW_004 | 1/0/42:43, 1/0/447:449 | Minor groove platform | homologous IL_7RQB_003 NA | |
IL_1NKW_005 | 1/0/80:84, 1/0/96:103 | Kink-turn | homologous IL_7A0S_004 IL_94910.1 | |
IL_1NKW_006 | 1/0/160:161, 1/0/189:191 | Single stack bend | homologous IL_7A0S_005 IL_90729.1 | |
IL_1NKW_007 | 1/0/165:172, 1/0/177:185 | 9x8 Sarcin-Ricin with GA cWW pair; G-bulge | geometric IL_3DIL_003 IL_34470.3 | |
IL_1NKW_009 | 1/0/215:222, 1/0/230:236 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7A0S_007 IL_04346.10 | |
IL_1NKW_010 | 1/0/299:301, 1/0/361:363 | No text annotation | ||
IL_1NKW_011 | 1/0/303:306, 1/0/354:359 | No text annotation | homologous IL_7A0S_008 IL_05192.4 | |
IL_1NKW_015 | 1/0/573:575, 1/0/584:586 | Isolated non-canonical cWW pair | geometric IL_7A0S_011 IL_07785.1 | |
IL_1NKW_016 | 1/0/600:602, 1/0/678:679 | Single bulged A | homologous IL_7A0S_012 IL_31462.6 | |
IL_1NKW_139 | 1/0/614:620, 1/0/629:635 | No text annotation | ||
IL_1NKW_018 | 1/0/615:620, 1/0/629:634 | No text annotation | ||
IL_1NKW_019 | 1/0/685:687, 1/0/819:821 | Isolated non-canonical cWW pair | geometric IL_4KNQ_002 IL_87907.2 | |
IL_1NKW_020 | 1/0/687:691, 1/0/812:819 | tHW-tHW cross-strand stack | homologous IL_7A0S_015 IL_54041.2 | |
IL_1NKW_022 | 1/0/715:716, 1/0/741:743 | Single bulged G | homologous IL_5J7L_262 IL_00225.13 | |
IL_1NKW_023 | 1/0/716:721, 1/0/736:741 | Triple sheared with non-canonical cWW | geometric IL_7A0S_018 IL_06136.2 | |
IL_1NKW_024 | 1/0/751:754, 1/0/769:771 | Major groove platform with extra cWW | homologous IL_7RQB_022 NA | |
IL_1NKW_025 | 1/0/754:756, 1/0/767:769 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_87907.2 | |
IL_1NKW_027 | 1/0/850:851, 1/0/951:953 | Single stack bend | geometric IL_7A0S_022 IL_90729.1 | |
IL_1NKW_029 | 1/0/857:860, 1/0/944:945 | Multiple bulged bases | geometric IL_4V9F_021 IL_82107.4 | |
IL_1NKW_158 | 1/0/860:861, 1/0/942:944 | No text annotation | ||
IL_1NKW_031 | 1/0/863:864, 1/0/938:940 | Single stack bend | homologous IL_5J7L_269 IL_26793.1 | |
IL_1NKW_032 | 1/0/864:866, 1/0/936:938 | Isolated non-canonical cWW pair | geometric IL_3MEI_002 IL_87907.2 | |
IL_1NKW_159 | 1/0/871:875, 1/0/927:931 | No text annotation | ||
IL_1NKW_034 | 1/0/875:877, 1/0/924:927 | Isolated non-canonical cWW with bulges | geometric IL_4PKD_001 IL_07785.1 | |
IL_1NKW_160 | 1/0/877:881, 1/0/921:924 | C-loop with bulged stacked A's | homologous IL_7A0S_029 IL_26222.2 | |
IL_1NKW_161 | 1/0/883:885, 1/0/917:919 | Isolated near basepair | homologous IL_7A0S_030 IL_42997.3 | |
IL_1NKW_038 | 1/0/963:965, 1/0/974:976 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_87907.2 | |
IL_1NKW_162 | 1/0/1005:1007, 1/0/1170:1171 | Single bulged C | homologous IL_7A0S_032 IL_61258.15 | |
IL_1NKW_040 | 1/0/1009:1013, 1/0/1164:1168 | UAA/GAN | homologous IL_7A0S_033 IL_38507.2 | |
IL_1NKW_041 | 1/0/1015:1022, 1/0/1161:1162 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_41203.4 | |
IL_1NKW_042 | 1/0/1022:1024, 1/0/1160:1161 | Single bulged U | geometric IL_5J7L_279 IL_89505.4 | |
IL_1NKW_043 | 1/0/1029:1035, 1/0/1150:1155 | Kink-turn related | homologous IL_4WF9_039 IL_57188.5 | |
IL_1NKW_137 | 1/0/1035:1041, 1/0/1135:1150 | No text annotation | homologous IL_9DFE_039 IL_50715.3 | |
IL_1NKW_044 | 1/0/1042:1045, 1/0/1132:1134 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
IL_1NKW_046 | 1/0/1054:1062, 1/0/1120:1123 | No text annotation | ||
IL_1NKW_047 | 1/0/1062:1063, 1/0/1118:1120 | Single stack bend | geometric IL_5J7L_044 IL_26793.1 | |
IL_1NKW_049 | 1/0/1070:1073, 1/0/1087:1090 | No text annotation | ||
IL_1NKW_163 | 1/0/1210:1212, 1/0/1260:1263 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.3 | |
IL_1NKW_052 | 1/0/1218:1220, 1/0/1252:1254 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10167.6 | |
IL_1NKW_053 | 1/0/1221:1228, 1/0/1247:1251 | Kink-turn | homologous IL_7A0S_043 IL_70923.9 | |
IL_1NKW_164 | 1/0/1232:1234, 1/0/1241:1243 | Intercalated cWW | homologous IL_7A0S_044 IL_31737.3 | |
IL_1NKW_055 | 1/0/1275:1282, 1/0/1994:2000 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_7RQB_049 NA | |
IL_1NKW_056 | 1/0/1332:1336, 1/0/1344:1346 | C-loop | homologous IL_7A0S_047 IL_83150.2 | |
IL_1NKW_057 | 1/0/1364:1368, 1/0/1389:1393 | UAA/GAN | homologous IL_7RQB_052 NA | |
IL_1NKW_058 | 1/0/1370:1374, 1/0/1383:1387 | tSH-tHW-tHS | homologous IL_7A0S_049 IL_17136.7 | |
IL_1NKW_060 | 1/0/1426:1430, 1/0/1598:1605 | Kink-turn | homologous IL_7A0S_050 IL_69229.3 | |
IL_1NKW_061 | 1/0/1431:1437, 1/0/1591:1597 | No text annotation | ||
IL_1NKW_165 | 1/0/1438:1443, 1/0/1580:1590 | No text annotation | ||
IL_1NKW_062 | 1/0/1447:1449, 1/0/1573:1576 | No text annotation | homologous IL_7A0S_052 IL_14688.1 | |
IL_1NKW_063 | 1/0/1451:1454, 1/0/1567:1571 | tSH-tHW | homologous IL_7A0S_053 IL_99646.2 | |
IL_1NKW_064 | 1/0/1463:1465, 1/0/1477:1478 | Single stack bend | homologous IL_7RQB_058 NA | |
IL_1NKW_065 | 1/0/1483:1485, 1/0/1538:1539 | Single stack bend | geometric IL_4V9F_005 IL_90729.1 | |
IL_1NKW_066 | 1/0/1488:1490, 1/0/1534:1535 | Single bulged C | homologous IL_7A0S_055 IL_61258.15 | |
IL_1NKW_067 | 1/0/1490:1492, 1/0/1530:1534 | No text annotation | ||
IL_1NKW_144 | 1/0/1490:1498, 1/0/1522:1534 | No text annotation | ||
IL_1NKW_069 | 1/0/1503:1508, 1/0/1514:1517 | No text annotation | ||
IL_1NKW_070 | 1/0/1668:1673, 1/0/1987:1989 | No text annotation | homologous IL_5J7L_304 IL_12566.4 | |
IL_1NKW_071 | 1/0/1680:1683, 1/0/1977:1980 | No text annotation | ||
IL_1NKW_145 | 1/0/1680:1686, 1/0/1976:1980 | No text annotation | ||
IL_1NKW_146 | 1/0/1680:1691, 1/0/1973:1980 | No text annotation | ||
IL_1NKW_072 | 1/0/1683:1686, 1/0/1976:1977 | Major groove platform; stack outside cWW | geometric IL_4V9F_008 IL_50694.7 | |
IL_1NKW_073 | 1/0/1686:1691, 1/0/1973:1976 | Intercalated tWH | homologous IL_7RQB_067 NA | |
IL_1NKW_074 | 1/0/1703:1708, 1/0/1713:1719 | tSH-tSH-tHH-tHS | geometric IL_4WF9_066 IL_47346.2 | |
IL_1NKW_075 | 1/0/1760:1762, 1/0/1963:1966 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
IL_1NKW_166 | 1/0/1789:1795, 1/0/1805:1813 | Kink-turn related | homologous IL_4WF9_069 IL_17069.5 | |
IL_1NKW_078 | 1/0/1829:1832, 1/0/1885:1886 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 IL_95583.2 | |
IL_1NKW_079 | 1/0/1833:1835, 1/0/1880:1884 | Isolated non-canonical cWW with bulges | geometric IL_5ML7_010 IL_07785.1 | |
IL_1NKW_080 | 1/0/1838:1841, 1/0/1876:1877 | Major groove minor groove platform; mini C-loop | homologous IL_7A0S_068 IL_68140.4 | |
IL_1NKW_081 | 1/0/1842:1848, 1/0/1869:1875 | No text annotation | ||
IL_1NKW_082 | 1/0/1848:1852, 1/0/1865:1869 | Triple sheared | geometric IL_5J7L_274 IL_17948.2 | |
IL_1NKW_148 | 1/0/1893:1894, 1/0/1901:1903 | No text annotation | geometric IL_8VTW_057 NA | |
IL_1NKW_167 | 1/0/1916:1928, 1/0/1944:1950 | No text annotation | ||
IL_1NKW_087 | 1/0/2033:2035, 1/0/2596:2597 | Major groove platform | homologous IL_7A0S_073 IL_48076.6 | |
IL_1NKW_168 | 1/0/2037:2040, 1/0/2590:2594 | No text annotation | homologous IL_7A0S_074 IL_70335.1 | |
IL_1NKW_088 | 1/0/2050:2052, 1/0/2421:2422 | Single bulged U | homologous IL_4WF9_080 IL_89505.4 | |
IL_1NKW_089 | 1/0/2053:2054, 1/0/2417:2420 | Minor groove platform | homologous IL_7A0S_076 IL_51454.3 | |
IL_1NKW_169 | 1/0/2064:2066, 1/0/2215:2218 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_85599.2 | |
IL_1NKW_150 | 1/0/2068:2070, 1/0/2211:2213 | Isolated non-canonical cWW pair | homologous IL_7A0S_078 IL_28037.2 | |
IL_1NKW_096 | 1/0/2091:2093, 1/0/2162:2164 | Not an internal loop | geometric IL_5VCI_005 NA | |
IL_1NKW_103 | 1/0/2276:2278, 1/0/2296:2300 | Isolated tHS basepair with bulges | homologous IL_7A0S_080 IL_61476.2 | |
IL_1NKW_104 | 1/0/2329:2332, 1/0/2343:2346 | Double sheared | homologous IL_7A0S_081 IL_09705.15 | |
IL_1NKW_105 | 1/0/2380:2382, 1/0/2393:2394 | Major groove platform | homologous IL_7A0S_082 IL_48076.6 | |
IL_1NKW_106 | 1/0/2432:2433, 1/0/2477:2479 | Single stack bend | homologous IL_9DFE_091 IL_26793.1 | |
IL_1NKW_151 | 1/0/2432:2434, 1/0/2475:2479 | No text annotation | homologous IL_5J7L_335 NA | |
IL_1NKW_107 | 1/0/2433:2434, 1/0/2475:2477 | Major groove platform | homologous IL_5J7L_392 IL_48076.6 | |
IL_1NKW_108 | 1/0/2436:2438, 1/0/2472:2473 | No text annotation | ||
IL_1NKW_152 | 1/0/2436:2440, 1/0/2468:2473 | No text annotation | ||
IL_1NKW_109 | 1/0/2438:2440, 1/0/2468:2472 | No text annotation | ||
IL_1NKW_110 | 1/0/2445:2449, 1/0/2459:2463 | Triple sheared | homologous IL_7A0S_087 IL_17948.2 | |
IL_1NKW_111 | 1/0/2486:2487, 1/0/2559:2561 | Major groove platform | homologous IL_7A0S_088 IL_07039.3 | |
IL_1NKW_112 | 1/0/2489:2491, 1/0/2553:2557 | Isolated non-canonical cWW with bulges | homologous IL_7A0S_089 IL_07785.1 | |
IL_1NKW_113 | 1/0/2491:2492, 1/0/2550:2553 | No text annotation | geometric IL_4WF9_096 IL_42626.2 | |
IL_1NKW_115 | 1/0/2501:2502, 1/0/2519:2522 | Major groove platform with intercalation | homologous IL_7RQB_099 NA | |
IL_1NKW_116 | 1/0/2570:2571, 1/0/2580:2582 | Single bulged A | homologous IL_7RQB_101 NA | |
IL_1NKW_154 | 1/0/2615:2619, 1/0/2754:2762 | tSH-tHS-tHW | homologous IL_7A0S_093 IL_04638.3 | |
IL_1NKW_119 | 1/0/2631:2637, 1/0/2642:2647 | 7x6 Sarcin-Ricin; G-bulge | geometric IL_4V9F_019 IL_16458.4 | |
IL_1NKW_120 | 1/0/2659:2663, 1/0/2705:2707 | C-loop | geometric IL_4WF9_101 IL_63596.11 | |
IL_1NKW_122 | 1/0/2666:2670, 1/0/2698:2702 | No text annotation | homologous IL_7A0S_096 IL_23774.1 | |
IL_1NKW_123 | 1/0/2674:2675, 1/0/2690:2694 | Multiple bulged bases | homologous IL_7RQB_106 NA | |
IL_1NKW_124 | 1/0/2717:2722, 1/0/2742:2747 | UAA/GAN with extra cWW | homologous IL_7RQB_107 NA | |
IL_1NKW_156 | 1/0/2813:2814, 1/0/2853:2855 | Major groove intercalation | homologous IL_7A0S_099 IL_00225.13 | |
IL_1NKW_127 | 1/0/2818:2820, 1/0/2846:2849 | Decoding loop related | homologous IL_7A0S_100 IL_31531.3 | |
IL_1NKW_170 | 1/0/2822:2827, 1/0/2840:2844 | No text annotation | homologous IL_7A0S_101 IL_70411.2 | |
IL_1NKW_131 | 1/9/19:21, 1/9/66:69 | Isolated non-canonical cWW pair | geometric IL_1U6B_001 IL_57744.1 | |
IL_1NKW_133 | 1/9/25:30, 1/9/58:62 | No text annotation | ||
IL_1NKW_157 | 1/9/25:31, 1/9/57:62 | No text annotation | ||
IL_1NKW_134 | 1/9/32:33, 1/9/53:56 | Minor groove platform | homologous IL_5TBW_374 NA | |
IL_1NKW_135 | 1/9/73:81, 1/9/100:108 | Bacterial 5S Loop E | geometric IL_364D_003 IL_56455.6 | |
IL_1NKW_136 | 1/9/82:84, 1/9/97:99 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_07785.1 |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
IL_1NKW_138 | Isolated non-canonical cWW pair | ||
IL_1NKW_003 | No text annotation | ||
IL_1NKW_008 | Isolated non-canonical cWW pair | ||
IL_1NKW_012 | Isolated non-canonical cWW pair | ||
IL_1NKW_013 | Isolated non-canonical cWW pair | ||
IL_1NKW_014 | Isolated non-canonical cWW pair | ||
IL_1NKW_017 | Isolated non-canonical cWW pair | ||
IL_1NKW_021 | Tandem non-canonical cWW pairs | ||
IL_1NKW_140 | No text annotation | ||
IL_1NKW_026 | No text annotation | ||
IL_1NKW_141 | No text annotation | ||
IL_1NKW_028 | Isolated non-canonical cWW pair | ||
IL_1NKW_030 | No text annotation | ||
IL_1NKW_033 | No text annotation | ||
IL_1NKW_035 | No text annotation | ||
IL_1NKW_036 | No text annotation | ||
IL_1NKW_037 | Isolated non-canonical cWW pair | ||
IL_1NKW_039 | Isolated cWS basepair | ||
IL_1NKW_045 | No text annotation | ||
IL_1NKW_048 | No text annotation | ||
IL_1NKW_050 | Tandem non-canonical cWW pairs | ||
IL_1NKW_051 | Isolated non-canonical cWW pair | ||
IL_1NKW_054 | No text annotation | ||
IL_1NKW_142 | UAA/GAN with extra cWW | ||
IL_1NKW_059 | No text annotation | ||
IL_1NKW_143 | No text annotation | ||
IL_1NKW_068 | Isolated non-canonical cWW pair | ||
IL_1NKW_076 | Isolated cWH basepair | ||
IL_1NKW_077 | No text annotation | ||
IL_1NKW_147 | No text annotation | ||
IL_1NKW_083 | Isolated non-canonical cWW pair | ||
IL_1NKW_084 | Isolated non-canonical cWW pair | ||
IL_1NKW_149 | No text annotation | ||
IL_1NKW_085 | No text annotation | ||
IL_1NKW_086 | Isolated cWH basepair | ||
IL_1NKW_090 | Double sheared | ||
IL_1NKW_091 | Isolated cWH basepair | ||
IL_1NKW_092 | Tandem non-canonical cWW pairs | ||
IL_1NKW_093 | Isolated cWH basepair | ||
IL_1NKW_094 | Isolated non-canonical cWW pair | ||
IL_1NKW_095 | No text annotation | ||
IL_1NKW_097 | No text annotation | ||
IL_1NKW_098 | Isolated non-canonical cWW pair | ||
IL_1NKW_099 | Isolated non-canonical cWW pair | ||
IL_1NKW_100 | No text annotation | ||
IL_1NKW_101 | Isolated non-canonical cWW pair | ||
IL_1NKW_102 | Isolated cWH basepair | ||
IL_1NKW_153 | No text annotation | ||
IL_1NKW_114 | No text annotation | ||
IL_1NKW_117 | No text annotation | ||
IL_1NKW_118 | Tandem non-canonical cWW pairs | ||
IL_1NKW_155 | C-loop with extra cWW pair | ||
IL_1NKW_121 | Isolated non-canonical cWW pair | ||
IL_1NKW_125 | Isolated cWH basepair | ||
IL_1NKW_126 | Isolated non-canonical cWW with bulges | ||
IL_1NKW_128 | No text annotation | ||
IL_1NKW_129 | Isolated non-canonical cWW pair | ||
IL_1NKW_130 | Isolated cWH basepair | ||
IL_1NKW_132 | No text annotation |
Valid loops
3D | Loop id | Location | Annotation; motif group | Mapped info |
---|---|---|---|---|
J3_1NKW_013 | 1/0/30:31, 1/0/485:495, 1/0/506:520 | No text annotation | homologous J3_4WF9_011 J3_92134.2 | |
J3_1NKW_014 | 1/0/32:35, 1/0/457:472, 1/0/479:484 | No text annotation | homologous J3_7A0S_016 J3_30040.2 | |
J3_1NKW_010 | 1/0/55:56, 1/0/69:75, 1/0/108:112 | No text annotation | homologous J3_5J7L_037 J3_35667.2 | |
J3_1NKW_015 | 1/0/611:614, 1/0/635:639, 1/0/646:669 | No text annotation | ||
J3_1NKW_001 | 1/0/696:702, 1/0/786:790, 1/0/800:807 | No text annotation | ||
J3_1NKW_002 | 1/0/710:713, 1/0/745:749, 1/0/773:778 | No text annotation | geometric J3_5TBW_005 NA | |
J3_1NKW_003 | 1/0/1066:1068, 1/0/1092:1102, 1/0/1111:1115 | No text annotation | ||
J3_1NKW_004 | 1/0/1311:1316, 1/0/1641:1643, 1/0/1656:1659 | No text annotation | homologous J3_7A0S_006 J3_32852.6 | |
J3_1NKW_005 | 1/0/1319:1322, 1/0/1621:1627, 1/0/1636:1638 | No text annotation | homologous J3_7A0S_007 J3_71677.1 | |
J3_1NKW_017 | 1/0/1323:1327, 1/0/1351:1358, 1/0/1617:1620 | No text annotation | ||
J3_1NKW_011 | 1/0/1357:1363, 1/0/1394:1398, 1/0/1415:1416 | No text annotation | homologous J3_7RQB_009 NA | |
J3_1NKW_020 | 1/0/2074:2076, 1/0/2179:2183, 1/0/2202:2207 | Kink-turn in J3 | homologous J3_5J7L_044 J3_89368.5 | |
J3_1NKW_007 | 1/0/2274:2276, 1/0/2300:2303, 1/0/2310:2316 | No text annotation | ||
J3_1NKW_018 | 1/0/2274:2278, 1/0/2296:2303, 1/0/2310:2316 | No text annotation | ||
J3_1NKW_008 | 1/0/2496:2499, 1/0/2524:2526, 1/0/2540:2546 | No text annotation | homologous J3_7RQB_012 NA | |
J3_1NKW_012 | 1/0/2789:2790, 1/0/2806:2811, 1/0/2857:2861 | No text annotation | homologous J3_7A0S_013 J3_76911.2 | |
J3_1NKW_021 | 1/9/12:18, 1/9/70:71, 1/9/110:113 | No text annotation | homologous J3_7A0S_021 J3_47324.1 | |
J4_1NKW_001 | 1/0/308:312, 1/0/327:330, 1/0/334:336, 1/0/348:352 | No text annotation | homologous J4_7A0S_002 J4_71729.5 | |
J4_1NKW_002 | 1/0/1283:1289, 1/0/1307:1308, 1/0/1662:1665, 1/0/1992:1993 | No text annotation | homologous J4_7A0S_004 J4_64571.5 | |
J4_1NKW_003 | 1/0/1361:1363, 1/0/1394:1398, 1/0/1415:1418, 1/0/1613:1614 | No text annotation | ||
J4_1NKW_004 | 1/0/1458:1460, 1/0/1481:1485, 1/0/1538:1545, 1/0/1558:1563 | No text annotation | ||
J4_1NKW_005 | 1/0/1763:1767, 1/0/1779:1783, 1/0/1819:1822, 1/0/1958:1962 | No text annotation | homologous J4_7A0S_008 J4_61477.5 | |
J4_1NKW_006 | 1/0/1825:1827, 1/0/1888:1889, 1/0/1907:1916, 1/0/1950:1955 | No text annotation | homologous J4_5J7L_026 J4_93343.1 | |
J4_1NKW_007 | 1/0/2264:2269, 1/0/2321:2326, 1/0/2349:2351, 1/0/2360:2362 | No text annotation | ||
J4_1NKW_008 | 1/0/2622:2625, 1/0/2653:2655, 1/0/2711:2716, 1/0/2748:2751 | No text annotation | homologous J4_7A0S_010 J4_54165.1 | |
J5_1NKW_001 | 1/0/46:53, 1/0/114:119, 1/0/128:129, 1/0/142:144, 1/0/153:155 | No text annotation | homologous J5_4WF9_001 J5_01737.2 | |
J5_1NKW_005 | 1/0/593:598, 1/0/681:684, 1/0/822:825, 1/0/1209:1210, 1/0/1263:1269 | No text annotation | homologous J5_7A0S_004 J5_74302.5 | |
J5_1NKW_006 | 1/0/1691:1700, 1/0/1722:1724, 1/0/1742:1743, 1/0/1747:1755, 1/0/1971:1973 | No text annotation | ||
J5_1NKW_007 | 1/0/2040:2047, 1/0/2425:2432, 1/0/2479:2486, 1/0/2561:2567, 1/0/2585:2590 | No text annotation | ||
J6_1NKW_001 | 1/0/44:45, 1/0/156:160, 1/0/191:201, 1/0/208:212, 1/0/239:243, 1/0/439:446 | No text annotation | ||
J6_1NKW_002 | 1/0/2057:2061, 1/0/2221:2225, 1/0/2237:2238, 1/0/2260:2263, 1/0/2363:2374, 1/0/2400:2414 | No text annotation | ||
J7_1NKW_002 | 1/0/829:835, 1/0/848:849, 1/0/954:957, 1/0/982:987, 1/0/998:1002, 1/0/1174:1178, 1/0/1196:1205 | No text annotation | ||
J11_1NKW_002 | 1/0/8:16, 1/0/534:543, 1/0/569:573, 1/0/586:588, 1/0/1274:1275, 1/0/2000:2006, 1/0/2023:2026, 1/0/2604:2609, 1/0/2768:2771, 1/0/2781:2786, 1/0/2864:2869 | No text annotation |
Problematic loops
# | loop id | Problem | Sequence |
---|---|---|---|
J3_1NKW_016 | No text annotation | ||
J3_1NKW_006 | No text annotation | ||
J3_1NKW_019 | No text annotation | ||
J3_1NKW_009 | No text annotation | ||
J5_1NKW_002 | No text annotation | ||
J5_1NKW_003 | No text annotation | ||
J5_1NKW_004 | No text annotation | ||
J7_1NKW_001 | No text annotation | ||
J11_1NKW_001 | No text annotation |
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