HL_1NKW_017

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1NKW|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_017 not in the Motif Atlas

Homologous match to HL_7A0S_018

Geometric discrepancy: 0.2588

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

1NKW|1|0|U|575
1NKW|1|0|A|576
1NKW|1|0|U|577
1NKW|1|0|U|578
1NKW|1|0|G|579
1NKW|1|0|A|580
1NKW|1|0|A|581
1NKW|1|0|G|582
1NKW|1|0|C|583
1NKW|1|0|A|584

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain J

50S ribosomal protein L15

Chain P

50S ribosomal protein L21