HL_1NKW_025

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

1NKW|1|0|C|968, 1NKW|1|0|U|969, 1NKW|1|0|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.4224

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

1NKW|1|0|A|966
1NKW|1|0|G|967
1NKW|1|0|C|968
1NKW|1|0|U|969
1NKW|1|0|A|970
1NKW|1|0|A|971
1NKW|1|0|C|972
1NKW|1|0|U|973

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

50S ribosomal protein L16