HL_1NKW_032

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1NKW|1|0|G|1338, 1NKW|1|0|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1961

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1NKW|1|0|G|1337
1NKW|1|0|G|1338
1NKW|1|0|U|1339
1NKW|1|0|C|1340
1NKW|1|0|G|1341
1NKW|1|0|U|1342
1NKW|1|0|C|1343

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17

Chain Q

50S ribosomal protein L22