HL_1NKW_051

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1NKW|1|0|A|2247, 1NKW|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_051 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.3349

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1NKW|1|0|C|2243
1NKW|1|0|C|2244
1NKW|1|0|A|2245
1NKW|1|0|A|2246
1NKW|1|0|A|2247
1NKW|1|0|A|2248
1NKW|1|0|U|2249
1NKW|1|0|G|2250
1NKW|1|0|U|2251
1NKW|1|0|A|2252
1NKW|1|0|A|2253
1NKW|1|0|C|2254
1NKW|1|0|G|2255

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L16

Chain U

50S ribosomal protein L27