HL_1NKW_062

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GUACCAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_062 not in the Motif Atlas

Geometric match to HL_3R4F_002

Geometric discrepancy: 0.3786

The information below is about HL_3R4F_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_38592.1

Basepair signature

cWW-cWW-F-F

Number of instances in this motif group

2

Unit IDs

1NKW|1|0|G|2679
1NKW|1|0|U|2680
1NKW|1|0|A|2681
1NKW|1|0|C|2682
1NKW|1|0|C|2683
1NKW|1|0|A|2684
1NKW|1|0|A|2685
1NKW|1|0|C|2686

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L17