HL_1NKW_065

3D structure

PDB id

1NKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAAGACCAC

Length

9 nucleotides

Bulged bases

1NKW|1|0|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NKW_065 not in the Motif Atlas

Geometric match to HL_7RQB_068

Geometric discrepancy: 0.2033

The information below is about HL_7RQB_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.1

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

1NKW|1|0|G|2794
1NKW|1|0|A|2795
1NKW|1|0|A|2796
1NKW|1|0|G|2797
1NKW|1|0|A|2798
1NKW|1|0|C|2799
1NKW|1|0|C|2800
1NKW|1|0|A|2801
1NKW|1|0|C|2802

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain L

50S ribosomal protein L17

Chain N

50S ribosomal protein L19