HL_1NKW_078
3D structure
- PDB id
- 1NKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CGAUUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1NKW_078 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.4522
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1NKW|1|0|C|58
1NKW|1|0|G|59
1NKW|1|0|A|60
1NKW|1|0|U|61
1NKW|1|0|U|62
1NKW|1|0|A|63
1NKW|1|0|C|64
1NKW|1|0|C|65
1NKW|1|0|U|66
1NKW|1|0|G|67
Current chains
- Chain 0
- 23S ribosomal RNA
Nearby chains
- Chain R
- 50S ribosomal protein L23
- Chain W
- 50S ribosomal protein L29
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