HL_1NWY_004

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_004 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.338

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1NWY|1|0|C|133
1NWY|1|0|G|134
1NWY|1|0|U|135
1NWY|1|0|A|136
1NWY|1|0|A|137
1NWY|1|0|G|138

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain R

ribosomal protein L23

Chain W

ribosomal protein L29