RNA 3D Hub //

1NWY Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_1NWY_0741/0/58:67Pseudoknot with intercalation
homologous
HL_4WF9_067
HL_17803.2
HL_1NWY_0021/0/85:95No text annotation
homologous
HL_7A0S_002
HL_76590.1
HL_1NWY_0031/0/121:126No text annotation
homologous
HL_4WF9_003
HL_75660.9
HL_1NWY_0041/0/133:138No text annotation
geometric
HL_5U3G_001
HL_75660.9
HL_1NWY_0051/0/146:151No text annotation
geometric
HL_5U3G_001
HL_75660.9
HL_1NWY_0061/0/172:177No text annotation
HL_1NWY_0751/0/202:207No text annotation
homologous
HL_7A0S_007
HL_91813.1
HL_1NWY_0081/0/223:229No text annotation
homologous
HL_7A0S_008
HL_76371.3
HL_1NWY_0091/0/316:323No text annotation
homologous
HL_7RQB_010
NA
HL_1NWY_0101/0/330:334No text annotation
homologous
HL_5J7L_143
NA
HL_1NWY_0691/0/338:346T-loop with unstacked turn
homologous
HL_5J7L_144
NA
HL_1NWY_0121/0/395:405No text annotation
homologous
HL_7A0S_013
HL_91503.8
HL_1NWY_0131/0/423:430Pseudoknot geometry
homologous
HL_5J7L_146
NA
HL_1NWY_0141/0/473:478GNRA
homologous
HL_7RQB_015
NA
HL_1NWY_0151/0/498:503GNRA
homologous
HL_7RQB_016
NA
HL_1NWY_0161/0/552:560No text annotation
geometric
HL_2Y8W_001
HL_40612.1
HL_1NWY_0171/0/575:584T-loop with 2 stacked bulged bases
geometric
HL_7A0S_018
HL_33597.4
HL_1NWY_0181/0/622:627No text annotation
HL_1NWY_0191/0/640:645GNRA
homologous
HL_7A0S_020
HL_34789.5
HL_1NWY_0201/0/725:732No text annotation
HL_1NWY_0761/0/758:765No text annotation
HL_1NWY_0221/0/791:799No text annotation
geometric
HL_6CF2_001
HL_46211.1
HL_1NWY_0231/0/839:844No text annotation
geometric
HL_7A0S_024
HL_27530.2
HL_1NWY_0251/0/966:973GNRA
homologous
HL_7A0S_026
HL_34789.5
HL_1NWY_0261/0/989:996No text annotation
homologous
HL_7A0S_027
HL_47171.2
HL_1NWY_0271/0/1075:1085No text annotation
homologous
HL_6PRV_001
HL_20174.1
HL_1NWY_0281/0/1103:1110No text annotation
homologous
HL_7RQB_030
NA
HL_1NWY_0291/0/1185:1189No text annotation
geometric
HL_4WF9_009
HL_40612.1
HL_1NWY_0301/0/1235:1240GNRA
homologous
HL_7A0S_031
HL_34789.5
HL_1NWY_0311/0/1294:1302T-loop with 2 stacked bulged bases
homologous
HL_7A0S_032
HL_33597.4
HL_1NWY_0321/0/1337:1343Pseudoknot geometry with 3' bulge
homologous
HL_4WF9_033
HL_49081.1
HL_1NWY_0331/0/1376:1381GNRA
homologous
HL_7RQB_035
NA
HL_1NWY_0341/0/1401:1412No text annotation
geometric
HL_7VTI_001
HL_89167.3
HL_1NWY_0351/0/1466:1476Pseudoknot
homologous
HL_7A0S_036
HL_00824.1
HL_1NWY_0361/0/1508:1514No text annotation
homologous
HL_7A0S_037
HL_39243.1
HL_1NWY_0371/0/1549:1554No text annotation
geometric
HL_7RQB_011
NA
HL_1NWY_0381/0/1628:1635No text annotation
homologous
HL_4WF9_038
HL_28592.3
HL_1NWY_0391/0/1647:1652No text annotation
homologous
HL_7RQB_041
NA
HL_1NWY_0401/0/1708:1713UNCG
homologous
HL_7A0S_042
HL_61337.5
HL_1NWY_0411/0/1731:1735No text annotation
geometric
HL_4V88_198
NA
HL_1NWY_0421/0/1743:1747No text annotation
homologous
HL_7A0S_044
HL_80709.5
HL_1NWY_0431/0/1767:1779No text annotation
homologous
HL_7A0S_045
HL_50951.2
HL_1NWY_0441/0/1797:1803GNRA related
homologous
HL_5J7L_179
NA
HL_1NWY_0451/0/1856:1861GNRA
homologous
HL_7A0S_047
HL_34789.5
HL_1NWY_0461/0/1894:1901No text annotation
HL_1NWY_0471/0/1932:1940No text annotation
homologous
HL_7A0S_048
HL_33350.1
HL_1NWY_0481/0/2010:2019No text annotation
homologous
HL_7A0S_049
HL_78372.2
HL_1NWY_0491/0/2188:2197No text annotation
HL_1NWY_0501/0/2227:2235LSU P loop
homologous
HL_7A0S_052
HL_11974.3
HL_1NWY_0511/0/2243:2255No text annotation
homologous
HL_4WF9_050
HL_02042.2
HL_1NWY_0521/0/2282:2292No text annotation
HL_1NWY_0531/0/2303:2310Pseudoknot geometry
homologous
HL_7A0S_055
HL_52651.3
HL_1NWY_0541/0/2334:2341No text annotation
geometric
HL_7VTI_001
HL_89167.3
HL_1NWY_0551/0/2353:2358GNRA
homologous
HL_4WF9_054
HL_34789.5
HL_1NWY_0561/0/2383:2392No text annotation
homologous
HL_4WF9_055
HL_51853.2
HL_1NWY_0571/0/2450:2458No text annotation
homologous
HL_4WF9_056
HL_52011.2
HL_1NWY_0721/0/2507:2514GNRA variation
homologous
HL_7A0S_060
HL_46665.3
HL_1NWY_0591/0/2530:2536LSU A loop
homologous
HL_7A0S_061
HL_48677.2
HL_1NWY_0601/0/2573:2578GNRA
homologous
HL_5J7L_196
NA
HL_1NWY_0611/0/2637:2642GNRA
homologous
HL_7RQB_064
NA
HL_1NWY_0731/0/2680:2685Ribsomal LSU H95
homologous
HL_7A0S_064
HL_12125.3
HL_1NWY_0631/0/2725:2739No text annotation
homologous
HL_7A0S_065
HL_53269.3
HL_1NWY_0651/0/2794:2802No text annotation
homologous
HL_7RQB_068
NA
HL_1NWY_0661/0/2831:2836GNRA
homologous
HL_7A0S_068
HL_34789.5
HL_1NWY_0671/9/35:51No text annotation
HL_1NWY_0681/9/88:93GNRA
homologous
HL_7A0S_070
HL_34789.5

Problematic loops

#loop idProblemSequence
HL_1NWY_001No text annotation
HL_1NWY_007No text annotation
HL_1NWY_011No text annotation
HL_1NWY_021No text annotation
HL_1NWY_024No text annotation
HL_1NWY_070No text annotation
HL_1NWY_071No text annotation
HL_1NWY_058tRNA anticodon loop
HL_1NWY_062No text annotation
HL_1NWY_064No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_1NWY_0011/0/24:30,
1/0/520:526		Triple sheared with non-canonical cWW
homologous
IL_7A0S_001
IL_22311.2
IL_1NWY_0021/0/36:37,
1/0/454:456		Single bulged A
homologous
IL_7A0S_002
IL_14190.3
IL_1NWY_0041/0/42:43,
1/0/447:449		Minor groove platform
homologous
IL_7RQB_003
NA
IL_1NWY_0051/0/80:84,
1/0/96:103		Kink-turn
homologous
IL_7A0S_004
IL_94910.1
IL_1NWY_0061/0/160:161,
1/0/189:191		Single stack bend
homologous
IL_7A0S_005
IL_15011.4
IL_1NWY_1451/0/165:171,
1/0/178:185		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_006
IL_62167.4
IL_1NWY_0091/0/215:222,
1/0/230:236		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_007
IL_62167.4
IL_1NWY_0101/0/299:301,
1/0/361:363		No text annotation
IL_1NWY_0111/0/303:306,
1/0/354:359		No text annotation
homologous
IL_7A0S_008
IL_05192.8
IL_1NWY_0141/0/573:575,
1/0/584:586		Isolated non-canonical cWW pair
homologous
IL_7A0S_011
IL_71625.4
IL_1NWY_0151/0/600:602,
1/0/678:679		Single bulged A
homologous
IL_7A0S_012
IL_14190.3
IL_1NWY_0171/0/615:620,
1/0/629:634		No text annotation
IL_1NWY_0181/0/685:687,
1/0/819:821		Isolated non-canonical cWW pair
geometric
IL_4KNQ_004
NA
IL_1NWY_0191/0/687:691,
1/0/812:819		tHW-tHW cross-strand stack
homologous
IL_7A0S_015
IL_73855.2
IL_1NWY_0201/0/715:716,
1/0/741:743		Single bulged G
homologous
IL_5J7L_262
NA
IL_1NWY_0211/0/716:721,
1/0/736:741		Triple sheared with non-canonical cWW
geometric
IL_7A0S_018
IL_29495.2
IL_1NWY_0221/0/751:754,
1/0/769:771		Major groove platform with extra cWW
homologous
IL_7RQB_022
NA
IL_1NWY_0231/0/754:756,
1/0/767:769		Isolated non-canonical cWW pair
geometric
IL_4V9F_017
IL_01003.5
IL_1NWY_0251/0/850:851,
1/0/951:953		Single stack bend
homologous
IL_7A0S_022
IL_15011.4
IL_1NWY_1461/0/857:861,
1/0/942:945		No text annotation
IL_1NWY_0281/0/863:864,
1/0/938:940		Single stack bend
homologous
IL_5J7L_269
NA
IL_1NWY_0291/0/864:866,
1/0/936:938		Isolated non-canonical cWW pair
geometric
IL_3MEI_002
IL_01003.5
IL_1NWY_1471/0/871:875,
1/0/927:931		5x5 Sarcin-Ricin with intercalated A; G-bulge
homologous
IL_7A0S_111
IL_38862.5
IL_1NWY_0311/0/875:877,
1/0/924:927		Isolated non-canonical cWW with bulges
geometric
IL_4PKD_001
IL_68118.5
IL_1NWY_0321/0/877:881,
1/0/921:924		C-loop
homologous
IL_7A0S_029
IL_16301.2
IL_1NWY_1481/0/883:885,
1/0/917:919		Isolated non-canonical cWW pair
homologous
IL_7A0S_030
IL_42997.6
IL_1NWY_0341/0/963:965,
1/0/974:976		Isolated non-canonical cWW pair
homologous
IL_7A0S_031
IL_01003.5
IL_1NWY_1491/0/1005:1007,
1/0/1170:1171		Single bulged C
homologous
IL_7A0S_032
IL_05642.4
IL_1NWY_0361/0/1009:1013,
1/0/1164:1168		UAA/GAN
homologous
IL_7A0S_033
IL_08938.2
IL_1NWY_0371/0/1015:1022,
1/0/1161:1162		Multiple bulged bases
geometric
IL_1R3E_002
IL_05670.1
IL_1NWY_0381/0/1022:1024,
1/0/1160:1161		Single bulged U
homologous
IL_5J7L_279
NA
IL_1NWY_0391/0/1029:1035,
1/0/1150:1155		Kink-turn related
homologous
IL_4WF9_039
IL_57188.6
IL_1NWY_1281/0/1035:1041,
1/0/1135:1150		No text annotation
geometric
IL_7A0S_037
IL_50715.4
IL_1NWY_0401/0/1042:1045,
1/0/1132:1134		Isolated non-canonical cWW pair
homologous
IL_7RQB_041
NA
IL_1NWY_0421/0/1054:1062,
1/0/1120:1123		No text annotation
IL_1NWY_0431/0/1062:1063,
1/0/1118:1120		Single stack bend
geometric
IL_5J7L_044
NA
IL_1NWY_0451/0/1070:1073,
1/0/1087:1090		No text annotation
IL_1NWY_1501/0/1210:1212,
1/0/1260:1263		Isolated cWS basepair
homologous
IL_4WF9_044
IL_42997.6
IL_1NWY_0481/0/1218:1220,
1/0/1252:1254		Isolated cWH basepair
homologous
IL_4WF9_045
IL_10892.3
IL_1NWY_0491/0/1221:1228,
1/0/1247:1251		Kink-turn
homologous
IL_7A0S_043
IL_90775.2
IL_1NWY_1511/0/1232:1234,
1/0/1241:1243		Intercalated cWW
homologous
IL_7A0S_044
IL_53541.1
IL_1NWY_0511/0/1275:1282,
1/0/1994:2000		8x7 Sarcin-Ricin; G-bulge
homologous
IL_7A0S_045
IL_62167.4
IL_1NWY_0521/0/1332:1336,
1/0/1344:1346		C-loop
homologous
IL_7A0S_047
IL_06671.2
IL_1NWY_0531/0/1364:1368,
1/0/1389:1393		UAA/GAN
homologous
IL_7RQB_052
NA
IL_1NWY_0541/0/1370:1374,
1/0/1383:1387		tSH-tWH-tHS
homologous
IL_7A0S_049
IL_05821.2
IL_1NWY_0561/0/1426:1430,
1/0/1598:1605		Kink-turn
homologous
IL_7A0S_050
IL_28245.1
IL_1NWY_0571/0/1431:1437,
1/0/1591:1597		No text annotation
IL_1NWY_1521/0/1438:1443,
1/0/1580:1590		No text annotation
IL_1NWY_0581/0/1447:1449,
1/0/1573:1576		Isolated non-canonical cWW pair
homologous
IL_7A0S_052
IL_38565.3
IL_1NWY_0591/0/1451:1454,
1/0/1567:1571		tSH-tHW
homologous
IL_7A0S_053
IL_74317.1
IL_1NWY_0601/0/1463:1465,
1/0/1477:1478		Single stack bend
homologous
IL_7RQB_058
NA
IL_1NWY_0611/0/1483:1485,
1/0/1538:1539		Single stack bend
geometric
IL_4V9F_005
IL_15011.4
IL_1NWY_0621/0/1488:1490,
1/0/1534:1535		Single bulged C
homologous
IL_7A0S_055
IL_05642.4
IL_1NWY_0631/0/1490:1492,
1/0/1530:1534		No text annotation
IL_1NWY_1351/0/1490:1498,
1/0/1522:1534		No text annotation
IL_1NWY_0651/0/1503:1508,
1/0/1514:1517		No text annotation
IL_1NWY_0661/0/1668:1673,
1/0/1987:1989		No text annotation
homologous
IL_5J7L_304
NA
IL_1NWY_0671/0/1680:1683,
1/0/1977:1980		No text annotation
IL_1NWY_1361/0/1680:1686,
1/0/1976:1980		No text annotation
IL_1NWY_1371/0/1680:1691,
1/0/1973:1980		No text annotation
IL_1NWY_0681/0/1683:1686,
1/0/1976:1977		Major groove platform; stack outside cWW
geometric
IL_4V9F_008
IL_74641.3
IL_1NWY_0691/0/1686:1691,
1/0/1973:1976		Intercalated tWH
geometric
IL_7RQB_067
NA
IL_1NWY_0701/0/1703:1708,
1/0/1713:1719		tSH-tSH-tHH-tHS
geometric
IL_4WF9_066
IL_20700.2
IL_1NWY_0711/0/1760:1762,
1/0/1963:1966		Isolated non-canonical cWW pair
geometric
IL_4V9F_105
IL_01003.5
IL_1NWY_1531/0/1789:1795,
1/0/1805:1813		Kink-turn related
homologous
IL_4WF9_069
IL_17069.6
IL_1NWY_0731/0/1829:1832,
1/0/1885:1886		Minor groove platform, major groove intercalation
homologous
IL_5J7L_314
NA
IL_1NWY_0741/0/1833:1835,
1/0/1880:1884		Isolated non-canonical cWW with bulges
geometric
IL_5ML7_010
IL_68118.5
IL_1NWY_0751/0/1838:1841,
1/0/1876:1877		Major groove minor groove platform; mini C-loop
homologous
IL_7A0S_068
IL_73108.3
IL_1NWY_1541/0/1843:1848,
1/0/1869:1874		No text annotation
IL_1NWY_0771/0/1848:1852,
1/0/1865:1869		Triple sheared
homologous
IL_7A0S_070
IL_15190.3
IL_1NWY_0801/0/1893:1894,
1/0/1901:1903		Single stack bend
geometric
IL_7RQB_058
NA
IL_1NWY_1551/0/1916:1928,
1/0/1944:1950		No text annotation
IL_1NWY_0821/0/2033:2035,
1/0/2596:2597		Major groove platform
homologous
IL_4WF9_078
IL_48076.9
IL_1NWY_0831/0/2037:2040,
1/0/2590:2594		No text annotation
homologous
IL_7RQB_079
NA
IL_1NWY_0841/0/2050:2052,
1/0/2421:2422		Single bulged U
homologous
IL_7A0S_075
IL_97561.6
IL_1NWY_0851/0/2053:2054,
1/0/2417:2420		Minor groove platform
geometric
IL_7RQB_028
NA
IL_1NWY_1561/0/2064:2066,
1/0/2215:2218		Isolated tHS basepair with bulges
homologous
IL_7A0S_077
IL_87316.3
IL_1NWY_1571/0/2068:2070,
1/0/2211:2213		Isolated non-canonical cWW pair
homologous
IL_7A0S_078
IL_71625.4
IL_1NWY_0931/0/2091:2093,
1/0/2162:2164		Not an internal loop
geometric
IL_5VCI_005
NA
IL_1NWY_0991/0/2329:2332,
1/0/2343:2346		Double sheared
homologous
IL_5J7L_333
NA
IL_1NWY_1001/0/2380:2382,
1/0/2393:2394		Major groove platform
homologous
IL_7A0S_082
IL_48076.9
IL_1NWY_1011/0/2432:2433,
1/0/2477:2479		Single stack bend
homologous
IL_9DFE_091
IL_15011.4
IL_1NWY_1401/0/2432:2434,
1/0/2475:2479		No text annotation
homologous
IL_5J7L_335
NA
IL_1NWY_1021/0/2433:2434,
1/0/2475:2477		Major groove platform
homologous
IL_5J7L_392
NA
IL_1NWY_1031/0/2436:2438,
1/0/2472:2473		No text annotation
IL_1NWY_1411/0/2436:2440,
1/0/2468:2473		No text annotation
IL_1NWY_1041/0/2438:2440,
1/0/2468:2472		No text annotation
IL_1NWY_1051/0/2445:2449,
1/0/2459:2463		Double sheared with non-canonical cWW
homologous
IL_7A0S_087
IL_87767.3
IL_1NWY_1061/0/2489:2492,
1/0/2550:2557		No text annotation
IL_1NWY_1081/0/2501:2502,
1/0/2519:2522		Major groove platform with intercalation
homologous
IL_7RQB_099
NA
IL_1NWY_1091/0/2570:2571,
1/0/2580:2582		Single bulged A
homologous
IL_7RQB_101
NA
IL_1NWY_1101/0/2615:2619,
1/0/2754:2762		tSH-tHS-tHW
homologous
IL_7RQB_102
NA
IL_1NWY_1121/0/2631:2637,
1/0/2642:2647		7x6 Sarcin-Ricin; G-bulge
geometric
IL_4V9F_019
IL_16458.6
IL_1NWY_1581/0/2659:2663,
1/0/2705:2707		C-loop
homologous
IL_4WF9_101
IL_63596.13
IL_1NWY_1141/0/2666:2670,
1/0/2698:2702		UAA/GAN related, with intercalation
homologous
IL_7A0S_096
IL_82016.1
IL_1NWY_1151/0/2674:2675,
1/0/2690:2694		Multiple bulged bases
homologous
IL_7RQB_106
NA
IL_1NWY_1161/0/2717:2722,
1/0/2742:2747		UAA/GAN with extra cWW
homologous
IL_7RQB_107
NA
IL_1NWY_1591/0/2813:2814,
1/0/2853:2855		Major groove intercalation
homologous
IL_7A0S_099
IL_28408.3
IL_1NWY_1181/0/2818:2820,
1/0/2846:2849		Decoding loop related
homologous
IL_7A0S_100
IL_05502.1
IL_1NWY_1601/0/2822:2827,
1/0/2840:2844		No text annotation
homologous
IL_7A0S_101
IL_48489.2
IL_1NWY_1221/9/19:21,
1/9/66:69		Isolated non-canonical cWW pair
geometric
IL_1U6B_001
IL_42997.6
IL_1NWY_1241/9/25:30,
1/9/58:62		No text annotation
IL_1NWY_1441/9/25:31,
1/9/57:62		No text annotation
geometric
IL_9E6Q_106
IL_41504.1
IL_1NWY_1251/9/32:33,
1/9/53:56		Minor groove platform
homologous
IL_5TBW_374
NA
IL_1NWY_1261/9/73:81,
1/9/100:108		Bacterial 5S Loop E
geometric
IL_364D_003
NA
IL_1NWY_1271/9/82:84,
1/9/97:99		Isolated non-canonical cWW pair
homologous
IL_7A0S_107
IL_71625.4

Problematic loops

#loop idProblemSequence
IL_1NWY_003No text annotation
IL_1NWY_0079x8 Sarcin-Ricin with GA cWW pair; G-bulge
IL_1NWY_008Isolated non-canonical cWW pair
IL_1NWY_129No text annotation
IL_1NWY_012Isolated non-canonical cWW pair
IL_1NWY_013Isolated non-canonical cWW pair
IL_1NWY_016Isolated non-canonical cWW pair
IL_1NWY_130No text annotation
IL_1NWY_131No text annotation
IL_1NWY_132No text annotation
IL_1NWY_024No text annotation
IL_1NWY_026Isolated non-canonical cWW pair
IL_1NWY_027No text annotation
IL_1NWY_0305x5 Sarcin-Ricin with intercalated A; G-bulge
IL_1NWY_033No text annotation
IL_1NWY_035Isolated cWS basepair
IL_1NWY_041No text annotation
IL_1NWY_044No text annotation
IL_1NWY_046Tandem non-canonical cWW pairs
IL_1NWY_047Isolated non-canonical cWW pair
IL_1NWY_050No text annotation
IL_1NWY_133UAA/GAN with extra cWW
IL_1NWY_055No text annotation
IL_1NWY_134No text annotation
IL_1NWY_064Isolated non-canonical cWW pair
IL_1NWY_072No text annotation
IL_1NWY_076No text annotation
IL_1NWY_078Isolated non-canonical cWW pair
IL_1NWY_079Isolated non-canonical cWW pair
IL_1NWY_138No text annotation
IL_1NWY_081No text annotation
IL_1NWY_139Major groove platform with extra cWW
IL_1NWY_086Isolated cWH basepair
IL_1NWY_087Double sheared
IL_1NWY_088Isolated cWH basepair
IL_1NWY_089Tandem non-canonical cWW pairs
IL_1NWY_090Isolated cWH basepair
IL_1NWY_091Isolated non-canonical cWW pair
IL_1NWY_092No text annotation
IL_1NWY_094No text annotation
IL_1NWY_095Isolated non-canonical cWW pair
IL_1NWY_096Isolated non-canonical cWW pair
IL_1NWY_097No text annotation
IL_1NWY_098Isolated non-canonical cWW pair
IL_1NWY_142No text annotation
IL_1NWY_107No text annotation
IL_1NWY_111Tandem non-canonical cWW pairs
IL_1NWY_143C-loop with extra cWW pair
IL_1NWY_113No text annotation
IL_1NWY_117Isolated non-canonical cWW with bulges
IL_1NWY_119No text annotation
IL_1NWY_120Isolated non-canonical cWW pair
IL_1NWY_121Isolated cWH basepair
IL_1NWY_123No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_1NWY_0131/0/30:31,
1/0/485:495,
1/0/506:520		No text annotation
homologous
J3_4WF9_011
J3_17917.2
J3_1NWY_0141/0/32:35,
1/0/457:472,
1/0/479:484		No text annotation
homologous
J3_7A0S_016
J3_07616.2
J3_1NWY_0101/0/55:56,
1/0/69:75,
1/0/108:112		No text annotation
homologous
J3_5J7L_037
NA
J3_1NWY_0151/0/611:614,
1/0/635:639,
1/0/646:669		No text annotation
J3_1NWY_0011/0/696:702,
1/0/786:791,
1/0/799:807		No text annotation
J3_1NWY_0021/0/710:713,
1/0/745:749,
1/0/773:778		No text annotation
geometric
J3_5TBW_005
NA
J3_1NWY_0031/0/1066:1068,
1/0/1092:1102,
1/0/1111:1115		No text annotation
J3_1NWY_0161/0/1066:1068,
1/0/1092:1103,
1/0/1110:1115		No text annotation
J3_1NWY_0041/0/1311:1316,
1/0/1641:1643,
1/0/1656:1659		No text annotation
homologous
J3_7A0S_006
J3_32852.7
J3_1NWY_0051/0/1319:1322,
1/0/1621:1627,
1/0/1636:1638		No text annotation
homologous
J3_7A0S_007
J3_47341.1
J3_1NWY_0111/0/1357:1363,
1/0/1394:1398,
1/0/1415:1416		No text annotation
homologous
J3_7RQB_009
NA
J3_1NWY_0171/0/2074:2076,
1/0/2179:2183,
1/0/2202:2207		Kink-turn 3-way junction
homologous
J3_5J7L_044
NA
J3_1NWY_0071/0/2274:2278,
1/0/2296:2303,
1/0/2310:2316		No text annotation
J3_1NWY_0081/0/2496:2499,
1/0/2524:2526,
1/0/2540:2546		No text annotation
homologous
J3_7RQB_012
NA
J3_1NWY_0121/0/2789:2790,
1/0/2806:2811,
1/0/2857:2861		No text annotation
homologous
J3_7A0S_013
J3_76911.2
J3_1NWY_0181/9/12:18,
1/9/70:71,
1/9/110:113		No text annotation
homologous
J3_7A0S_021
J3_47324.1
J4_1NWY_0011/0/308:312,
1/0/327:330,
1/0/334:336,
1/0/348:352		No text annotation
homologous
J4_7A0S_002
J4_16174.1
J4_1NWY_0021/0/1283:1289,
1/0/1307:1308,
1/0/1662:1665,
1/0/1992:1993		No text annotation
homologous
J4_7A0S_004
J4_64571.6
J4_1NWY_0031/0/1323:1327,
1/0/1351:1356,
1/0/1417:1418,
1/0/1613:1620		No text annotation
homologous
J4_4WF9_005
J4_77353.2
J4_1NWY_0091/0/1458:1460,
1/0/1481:1485,
1/0/1538:1545,
1/0/1558:1563		No text annotation
J4_1NWY_0051/0/1763:1767,
1/0/1779:1783,
1/0/1819:1822,
1/0/1958:1962		No text annotation
homologous
J4_7A0S_008
J4_61477.6
J4_1NWY_0061/0/1825:1827,
1/0/1888:1889,
1/0/1907:1916,
1/0/1950:1955		No text annotation
homologous
J4_5J7L_026
NA
J4_1NWY_0071/0/2264:2269,
1/0/2321:2326,
1/0/2349:2351,
1/0/2360:2362		No text annotation
J4_1NWY_0081/0/2622:2625,
1/0/2653:2655,
1/0/2711:2716,
1/0/2748:2751		No text annotation
homologous
J4_7A0S_010
J4_54165.1
J5_1NWY_0011/0/46:53,
1/0/114:119,
1/0/128:129,
1/0/142:144,
1/0/153:155		No text annotation
homologous
J5_4WF9_001
J5_27223.2
J5_1NWY_0051/0/593:598,
1/0/681:684,
1/0/822:825,
1/0/1209:1210,
1/0/1263:1269		No text annotation
homologous
J5_7A0S_004
J5_74302.6
J5_1NWY_0061/0/1691:1700,
1/0/1722:1724,
1/0/1742:1743,
1/0/1747:1755,
1/0/1971:1973		No text annotation
J5_1NWY_0041/0/2040:2048,
1/0/2424:2432,
1/0/2479:2487,
1/0/2559:2567,
1/0/2585:2590		No text annotation
J6_1NWY_0011/0/44:45,
1/0/156:160,
1/0/191:201,
1/0/208:212,
1/0/239:243,
1/0/439:446		No text annotation
J6_1NWY_0031/0/2057:2060,
1/0/2222:2225,
1/0/2237:2238,
1/0/2260:2263,
1/0/2363:2374,
1/0/2400:2414		No text annotation
J7_1NWY_0021/0/830:835,
1/0/848:849,
1/0/954:957,
1/0/982:987,
1/0/998:1002,
1/0/1174:1178,
1/0/1196:1204		No text annotation
J11_1NWY_0021/0/8:16,
1/0/534:543,
1/0/569:573,
1/0/586:588,
1/0/1274:1275,
1/0/2000:2006,
1/0/2023:2026,
1/0/2604:2609,
1/0/2768:2771,
1/0/2781:2786,
1/0/2864:2869		No text annotation

Problematic loops

#loop idProblemSequence
J3_1NWY_006No text annotation
J3_1NWY_009No text annotation
J4_1NWY_004No text annotation
J5_1NWY_002No text annotation
J5_1NWY_003No text annotation
J6_1NWY_002No text annotation
J7_1NWY_001No text annotation
J11_1NWY_001No text annotation

Coloring options:
Copyright 2026 BGSU RNA group. Page generated in 0.0956 s