HL_1NWY_013

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

1NWY|1|0|G|424

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_013 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.1546

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

1NWY|1|0|G|423
1NWY|1|0|G|424
1NWY|1|0|A|425
1NWY|1|0|C|426
1NWY|1|0|C|427
1NWY|1|0|A|428
1NWY|1|0|C|429
1NWY|1|0|C|430

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains