HL_1NWY_017

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UAUUGAAGCA

Length

10 nucleotides

Bulged bases

1NWY|1|0|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_017 not in the Motif Atlas

Geometric match to HL_7A0S_018

Geometric discrepancy: 0.2602

The information below is about HL_7A0S_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1NWY|1|0|U|575
1NWY|1|0|A|576
1NWY|1|0|U|577
1NWY|1|0|U|578
1NWY|1|0|G|579
1NWY|1|0|A|580
1NWY|1|0|A|581
1NWY|1|0|G|582
1NWY|1|0|C|583
1NWY|1|0|A|584

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain B

ribosomal protein L3

Chain J

ribosomal protein L15

Chain P

ribosomal protein L21