HL_1NWY_025

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AGCUAACU

Length

8 nucleotides

Bulged bases

1NWY|1|0|C|968, 1NWY|1|0|U|969, 1NWY|1|0|C|972

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_025 not in the Motif Atlas

Homologous match to HL_7A0S_026

Geometric discrepancy: 0.4154

The information below is about HL_7A0S_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

1NWY|1|0|A|966
1NWY|1|0|G|967
1NWY|1|0|C|968
1NWY|1|0|U|969
1NWY|1|0|A|970
1NWY|1|0|A|971
1NWY|1|0|C|972
1NWY|1|0|U|973

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 9

5S ribosomal RNA; 5S rRNA

Chain K

ribosomal protein L16