HL_1NWY_032

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGUCGUC

Length

7 nucleotides

Bulged bases

1NWY|1|0|G|1338, 1NWY|1|0|U|1342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_032 not in the Motif Atlas

Homologous match to HL_4WF9_033

Geometric discrepancy: 0.1941

The information below is about HL_4WF9_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

1NWY|1|0|G|1337
1NWY|1|0|G|1338
1NWY|1|0|U|1339
1NWY|1|0|C|1340
1NWY|1|0|G|1341
1NWY|1|0|U|1342
1NWY|1|0|C|1343

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain L

ribosomal protein L17

Chain Q

ribosomal protein L22