HL_1NWY_035

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUAUGGCUAUG

Length

11 nucleotides

Bulged bases

1NWY|1|0|A|1468, 1NWY|1|0|U|1475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_035 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.3627

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_00824.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1NWY|1|0|C|1466
1NWY|1|0|U|1467
1NWY|1|0|A|1468
1NWY|1|0|U|1469
1NWY|1|0|G|1470
1NWY|1|0|G|1471
1NWY|1|0|C|1472
1NWY|1|0|U|1473
1NWY|1|0|A|1474
1NWY|1|0|U|1475
1NWY|1|0|G|1476

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain L

ribosomal protein L17