HL_1NWY_038

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

1NWY|1|0|A|1630, 1NWY|1|0|A|1632, 1NWY|1|0|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_038 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.4155

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1NWY|1|0|C|1628
1NWY|1|0|G|1629
1NWY|1|0|A|1630
1NWY|1|0|C|1631
1NWY|1|0|A|1632
1NWY|1|0|C|1633
1NWY|1|0|A|1634
1NWY|1|0|G|1635

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 2

ribosomal protein L34

Chain Q

ribosomal protein L22