HL_1NWY_048

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAAAGAUGC

Length

10 nucleotides

Bulged bases

1NWY|1|0|A|2013, 1NWY|1|0|A|2014, 1NWY|1|0|G|2015, 1NWY|1|0|U|2017, 1NWY|1|0|G|2018

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_048 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.2377

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

1NWY|1|0|G|2010
1NWY|1|0|U|2011
1NWY|1|0|A|2012
1NWY|1|0|A|2013
1NWY|1|0|A|2014
1NWY|1|0|G|2015
1NWY|1|0|A|2016
1NWY|1|0|U|2017
1NWY|1|0|G|2018
1NWY|1|0|C|2019

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain B

ribosomal protein L3