HL_1NWY_050

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

1NWY|1|0|G|2229

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_050 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1645

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

1NWY|1|0|C|2227
1NWY|1|0|U|2228
1NWY|1|0|G|2229
1NWY|1|0|G|2230
1NWY|1|0|G|2231
1NWY|1|0|G|2232
1NWY|1|0|C|2233
1NWY|1|0|G|2234
1NWY|1|0|G|2235

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain K

ribosomal protein L16

Chain U

ribosomal protein L27