HL_1NWY_051

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCAAAAUGUAACG

Length

13 nucleotides

Bulged bases

1NWY|1|0|A|2247, 1NWY|1|0|C|2254

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_051 not in the Motif Atlas

Homologous match to HL_4WF9_050

Geometric discrepancy: 0.3346

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

13

Unit IDs

1NWY|1|0|C|2243
1NWY|1|0|C|2244
1NWY|1|0|A|2245
1NWY|1|0|A|2246
1NWY|1|0|A|2247
1NWY|1|0|A|2248
1NWY|1|0|U|2249
1NWY|1|0|G|2250
1NWY|1|0|U|2251
1NWY|1|0|A|2252
1NWY|1|0|A|2253
1NWY|1|0|C|2254
1NWY|1|0|G|2255

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain K

ribosomal protein L16

Chain U

ribosomal protein L27