HL_1NWY_058

3D structure

PDB id

1NWY (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH AZITHROMYCIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CUGAAGAAGG

Length

10 nucleotides

Bulged bases

1NWY|1|0|G|2508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NWY_058 not in the Motif Atlas

Geometric match to HL_3W3S_002

Geometric discrepancy: 0.3876

The information below is about HL_3W3S_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_81376.3

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

43

Unit IDs

1NWY|1|0|C|2506
1NWY|1|0|U|2507
1NWY|1|0|G|2508
1NWY|1|0|A|2509
1NWY|1|0|A|2510
1NWY|1|0|G|2511
1NWY|1|0|A|2512
1NWY|1|0|A|2513
1NWY|1|0|G|2514
1NWY|1|0|G|2515

Current chains

Chain 0

23S RIBOSOMAL RRNA

Nearby chains

Chain 4

ribosomal protein L36

Chain E

ribosomal protein L6