HL_1NYB_006

3D structure

PDB id

1NYB (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF THE BACTERIOPHAGE PHI21 N PEPTIDE-BOXB RNA COMPLEX

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UCUAACCG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1NYB_006 not in the Motif Atlas

Geometric match to HL_1E8O_001

Geometric discrepancy: 0.29

The information below is about HL_1E8O_001

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1NYB|6|B|U|9
1NYB|6|B|C|10
1NYB|6|B|U|11
1NYB|6|B|A|12
1NYB|6|B|A|13
1NYB|6|B|C|14
1NYB|6|B|C|15
1NYB|6|B|G|16

Current chains

Chain B

BoxB RNA

Nearby chains

Chain A

Probable regulatory protein N