HL_1OLN_001

3D structure

PDB id

1OLN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Model for thiostrepton antibiotic binding to L11 substrate from 50S ribosomal RNA

Experimental method

SOLUTION NMR, THEORETICAL MODEL

Resolution

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1OLN|1|C|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OLN_001 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.0735

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

1OLN|1|C|C|1064
1OLN|1|C|U|1065
1OLN|1|C|U|1066
1OLN|1|C|A|1067
1OLN|1|C|G|1068
1OLN|1|C|A|1069
1OLN|1|C|A|1070
1OLN|1|C|G|1071
1OLN|1|C|C|1072
1OLN|1|C|A|1073
1OLN|1|C|G|1074

Current chains

Chain C

RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L11

Chain B

THIOSTREPTON