HL_1OND_012

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGUUCGUGAAACG

Length

13 nucleotides

Bulged bases

1OND|1|0|G|399, 1OND|1|0|U|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_012 not in the Motif Atlas

Homologous match to HL_4WF9_013

Geometric discrepancy: 0.4491

The information below is about HL_4WF9_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69139.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

1OND|1|0|U|394
1OND|1|0|G|395
1OND|1|0|U|396
1OND|1|0|U|397
1OND|1|0|C|398
1OND|1|0|G|399
1OND|1|0|U|400
1OND|1|0|G|401
1OND|1|0|A|402
1OND|1|0|A|403
1OND|1|0|A|404
1OND|1|0|C|405
1OND|1|0|G|406

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains