HL_1OND_021

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UGCUGAAACA

Length

10 nucleotides

Bulged bases

1OND|1|0|U|760, 1OND|1|0|A|764

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_021 not in the Motif Atlas

Homologous match to HL_8VTW_022

Geometric discrepancy: 0.4046

The information below is about HL_8VTW_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1OND|1|0|U|757
1OND|1|0|G|758
1OND|1|0|C|759
1OND|1|0|U|760
1OND|1|0|G|761
1OND|1|0|A|762
1OND|1|0|A|763
1OND|1|0|A|764
1OND|1|0|C|765
1OND|1|0|A|766

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32