Motif HL_39334.8 Version HL_39334.8 of this group appears in releases 3.88 to 3.90
#S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 5-7 | |||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | HL_5J7L_155 | 5J7L | 0.2646 | 3 | DA | LSU rRNA | U | 744 | 1MG | 745 | PSU | 746 | G | 748 | A | 749 | A | 750 | A | 753 | cWW | tSW | cWS |
2 | HL_7A0S_022 | 7A0S | 0.2027 | 3 | X | LSU rRNA | U | 757 | G | 758 | C | 759 | G | 761 | A | 762 | A | 763 | A | 766 | cWW | tSW | cWS |
3 | HL_4WF9_023 | 4WF9 | 0.2078 | 3 | X | LSU rRNA | C | 789 | G | 790 | U | 791 | G | 793 | A | 794 | A | 795 | G | 798 | cWW | tSW | cWS |
4 | HL_8VTW_022 | 8VTW | 0.1475 | 3 | 1A | LSU rRNA | G | 744 | G | 745 | A | 746 | G | 748 | C | 749 | A | 750 | C | 753 | cWW | tSW | cWS |
5 | HL_4V9F_024 | 4V9F | 0.1211 | 3 | 0 | LSU rRNA | U | 837 | C | 838 | C | 839 | A | 841 | C | 842 | A | 843 | A | 846 | cWW | tSW | cWS |
6 | HL_5TBW_020 | 5TBW | 0.0000 | 3 | 1 | LSU rRNA | A | 876 | C | 877 | G | 878 | G | 880 | C | 881 | A | 882 | U | 885 | cWW | tSW | ncWS |
7 | HL_8C3A_020 | 8C3A | 0.0832 | 3 | 1 | LSU rRNA | A | 872 | C | 873 | G | 874 | G | 876 | C | 877 | A | 878 | U | 881 | cWW | tSW | cWS |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
ACGUGCAAAU | 2 |
UGAAAAA | 1 |
UGCUGAAACA | 1 |
CGUUGAAAAG | 1 |
GGAUGCAAAC | 1 |
UCCUACAAUA | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
CGUGCAAA | 2 |
(1MG)(PSU)(5MU)GAAAA | 1 |
GCUGAAAC | 1 |
GUUGAAAA | 1 |
GAUGCAAA | 1 |
CCUACAAU | 1 |
- Annotations
-
- (7)
- Basepair signature
- cWW-cWS-tSW-F-F
- Heat map statistics
- Min 0.08 | Avg 0.18 | Max 0.33
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