HL_1OND_022

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

1OND|1|0|A|794

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_022 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3496

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46211.1

Basepair signature

cWW-cWW-tSW-F

Number of instances in this motif group

10

Unit IDs

1OND|1|0|G|791
1OND|1|0|U|792
1OND|1|0|G|793
1OND|1|0|A|794
1OND|1|0|A|795
1OND|1|0|A|796
1OND|1|0|A|797
1OND|1|0|G|798
1OND|1|0|C|799

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains