HL_1OND_031

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_031 not in the Motif Atlas

Homologous match to HL_7A0S_032

Geometric discrepancy: 0.2596

The information below is about HL_7A0S_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.4

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

137

Unit IDs

1OND|1|0|G|1294
1OND|1|0|U|1295
1OND|1|0|G|1296
1OND|1|0|A|1297
1OND|1|0|G|1298
1OND|1|0|A|1299
1OND|1|0|A|1300
1OND|1|0|U|1301
1OND|1|0|C|1302

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S ribosomal protein L22