HL_1OND_044

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

1OND|1|0|C|1801

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_044 not in the Motif Atlas

Homologous match to HL_5J7L_179

Geometric discrepancy: 0.4249

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1OND|1|0|C|1797
1OND|1|0|G|1798
1OND|1|0|A|1799
1OND|1|0|A|1800
1OND|1|0|C|1801
1OND|1|0|A|1802
1OND|1|0|G|1803

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains