HL_1OND_063

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1OND|1|0|A|2730, 1OND|1|0|G|2731, 1OND|1|0|C|2735, 1OND|1|0|A|2737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_063 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.4784

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.3

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1OND|1|0|C|2725
1OND|1|0|U|2726
1OND|1|0|G|2727
1OND|1|0|A|2728
1OND|1|0|A|2729
1OND|1|0|A|2730
1OND|1|0|G|2731
1OND|1|0|C|2732
1OND|1|0|A|2733
1OND|1|0|U|2734
1OND|1|0|C|2735
1OND|1|0|U|2736
1OND|1|0|A|2737
1OND|1|0|A|2738
1OND|1|0|G|2739

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains