HL_1OND_065

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CGGAAGACCACCG

Length

13 nucleotides

Bulged bases

1OND|1|0|A|2795

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_065 not in the Motif Atlas

Geometric match to HL_5TBW_226

Geometric discrepancy: 0.3936

The information below is about HL_5TBW_226

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_59342.2

Basepair signature

cWW-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

1OND|1|0|C|2792
1OND|1|0|G|2793
1OND|1|0|G|2794
1OND|1|0|A|2795
1OND|1|0|A|2796
1OND|1|0|G|2797
1OND|1|0|A|2798
1OND|1|0|C|2799
1OND|1|0|C|2800
1OND|1|0|A|2801
1OND|1|0|C|2802
1OND|1|0|C|2803
1OND|1|0|G|2804

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Z

50S ribosomal protein L32