Motif HL_59342.2 Version HL_59342.2 of this group appears in releases 3.89 to 3.89
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-9 | 3-8 | 4-7 | 4-8 | 5-6 | 7-8 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_5J7L_138 | 5J7L | 0.7860 | 1 | DA | LSU rRNA | U | 158 | G | 159 | A | 160 | A | 161 | U | 162 | C | 164 | A | 165 | U | 166 | A | 167 | G | 168 | cWW | tSH | tHW | tHW | cSH | ||
| 2 | HL_2W2H_003 | 2W2H | 0.7182 | 2 | R | RNA (21-mer) | G | 8 | A | 9 | U | 10 | C | 12 | U | 13 | C | 15 | G | 16 | G | 17 | U | 18 | C | 19 | cWW | ncWW | ncWW | ||||
| 3 | HL_5TBW_226 | 5TBW | 0.0000 | 2 | 1 | LSU rRNA | U | 540 | U | 541 | G | 542 | C | 543 | C | 544 | G | 547 | G | 548 | U | 549 | A | 550 | A | 551 | cWW | ncWW | ncWW | ncWW | ncWW | ||
| 4 | HL_7A0S_075 | 7A0S | 0.5029 | 4 | X | LSU rRNA | A | 253 | A | 254 | A | 255 | C | 256 | G | 257 | C | 262 | G | 263 | U | 264 | U | 265 | U | 266 | ncWW | ncWW | ncSH | ||||
| 5 | HL_4WF9_068 | 4WF9 | 0.7245 | 2 | X | LSU rRNA | C | 280 | A | 281 | A | 282 | G | 283 | C | 284 | G | 287 | C | 288 | U | 289 | U | 290 | G | 291 | cWW | ncWW | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UGAAUCCAUAG | 1 |
| GAUUCUGCGGUC | 1 |
| UUGCCUCGGUAA | 1 |
| AAACGCUUGCGUUU | 1 |
| CAAGCUUGCUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAAUCCAUA | 1 |
| AUUCUGCGGU | 1 |
| UGCCUCGGUA | 1 |
| AACGCUUGCGUU | 1 |
| AAGCUUGCUU | 1 |
Release history
| Release | 3.89 |
|---|---|
| Date | 2024-10-09 |
| Status | Updated, 2 parents |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (5)
- Basepair signature
- cWW-F-F-F-F-cWW-F-F
- Heat map statistics
- Min 0.50 | Avg 0.64 | Max 0.97
Coloring options: