HL_1OND_068

3D structure

PDB id

1OND (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE 50S LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS COMPLEXED WITH TROLEANDOMYCIN MACROLIDE ANTIBIOTIC

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GUGAGAGUC

Length

9 nucleotides

Bulged bases

1OND|1|0|G|340, 1OND|1|0|A|341, 1OND|1|0|G|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OND_068 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3439

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

1OND|1|0|G|338
1OND|1|0|U|339
1OND|1|0|G|340
1OND|1|0|A|341
1OND|1|0|G|342
1OND|1|0|A|343
1OND|1|0|G|344
1OND|1|0|U|345
1OND|1|0|C|346

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains