3D structure

PDB id
1OOA (explore in PDB, NAKB, or RNA 3D Hub)
Description
CRYSTAL STRUCTURE OF NF-kB(p50)2 COMPLEXED TO A HIGH-AFFINITY RNA APTAMER
Experimental method
X-RAY DIFFRACTION
Resolution
2.45 Å

Loop

Sequence
UGUAAG
Length
6 nucleotides
Bulged bases
1OOA|1|C|A|16
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_04783.1
Basepair signature
cWW-F-F-F
Number of instances in this motif group
10

Unit IDs

1OOA|1|C|U|13
1OOA|1|C|G|14
1OOA|1|C|U|15
1OOA|1|C|A|16
1OOA|1|C|A|17
1OOA|1|C|G|18

Current chains

Chain C
RNA aptamer

Nearby chains

Chain A
Nuclear factor NF-kappa-B p105 subunit

Coloring options:

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