HL_1OQ0_015

3D structure

PDB id

1OQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

P6.1 stem loop from the activation domain of hTR

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUGGG

Length

5 nucleotides

Bulged bases

1OQ0|15|A|U|7, 1OQ0|15|A|G|9

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1OQ0_015 not in the Motif Atlas

Geometric match to HL_5TBW_022

Geometric discrepancy: 0.3894

The information below is about HL_5TBW_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

1OQ0|15|A|U|6
1OQ0|15|A|U|7
1OQ0|15|A|G|8
1OQ0|15|A|G|9
1OQ0|15|A|G|10

Current chains

Chain A

P6.1 RNA hairpin from hTR

Nearby chains