HL_1P5M_006

3D structure

PDB id

1P5M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution Structure of HCV IRES Domain IIa

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1P5M_006 not in the Motif Atlas

Geometric match to HL_2NUE_001

Geometric discrepancy: 0.3046

The information below is about HL_2NUE_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_91813.1

Basepair signature

cWW-cSW-F

Number of instances in this motif group

24

Unit IDs

1P5M|6|A|C|28
1P5M|6|A|U|29
1P5M|6|A|U|30
1P5M|6|A|C|31
1P5M|6|A|G|32
1P5M|6|A|G|33

Current chains

Chain A

55-MER

Nearby chains