1P5M Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1P5M_001 | 1/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_002 | 2/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_003 | 3/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_004 | 4/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_005 | 5/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_006 | 6/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_007 | 7/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_008 | 8/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_009 | 9/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_010 | 10/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_011 | 11/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_012 | 12/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_013 | 13/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_014 | 14/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_015 | 15/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_016 | 16/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_017 | 17/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_018 | 18/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_019 | 19/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_020 | 20/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_021 | 21/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 | |
| HL_1P5M_022 | 22/A/28:33 | UNCG variation | geometric HL_2NUE_001 HL_91813.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_1P5M_023 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1P5M_001 | 1/A/5:7, 1/A/50:51 | No text annotation | ||
| IL_1P5M_002 | 1/A/10:16, 1/A/46:47 | No text annotation | ||
| IL_1P5M_003 | 1/A/19:20, 1/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_004 | 1/A/20:23, 1/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_005 | 1/A/25:27, 1/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.4 | |
| IL_1P5M_006 | 2/A/5:7, 2/A/50:51 | Single bulged U | geometric IL_2ZY6_002 IL_97561.6 | |
| IL_1P5M_007 | 2/A/10:16, 2/A/46:47 | No text annotation | ||
| IL_1P5M_008 | 2/A/19:20, 2/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_009 | 2/A/20:23, 2/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_010 | 2/A/25:27, 2/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.4 | |
| IL_1P5M_011 | 3/A/5:7, 3/A/50:51 | No text annotation | ||
| IL_1P5M_012 | 3/A/10:16, 3/A/46:47 | No text annotation | ||
| IL_1P5M_013 | 3/A/19:20, 3/A/41:43 | No text annotation | ||
| IL_1P5M_014 | 3/A/20:23, 3/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_280D_001 NA | |
| IL_1P5M_015 | 3/A/25:27, 3/A/34:36 | Isolated non-canonical cWW pair | geometric IL_4V88_433 NA | |
| IL_1P5M_016 | 4/A/5:7, 4/A/50:51 | No text annotation | ||
| IL_1P5M_017 | 4/A/10:16, 4/A/46:47 | No text annotation | ||
| IL_1P5M_018 | 4/A/19:20, 4/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_019 | 4/A/20:23, 4/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.3 | |
| IL_1P5M_020 | 4/A/25:27, 4/A/34:36 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_01003.5 | |
| IL_1P5M_021 | 5/A/5:7, 5/A/50:51 | Single bulged U | geometric IL_6UFG_004 IL_97561.6 | |
| IL_1P5M_022 | 5/A/10:16, 5/A/46:47 | No text annotation | geometric IL_2PN3_002 IL_78250.1 | |
| IL_1P5M_023 | 5/A/19:20, 5/A/41:43 | No text annotation | ||
| IL_1P5M_024 | 5/A/20:23, 5/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_025 | 5/A/25:27, 5/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5M_026 | 6/A/5:7, 6/A/50:51 | Single bulged U | geometric IL_1S03_005 IL_97561.6 | |
| IL_1P5M_028 | 6/A/10:16, 6/A/46:47 | No text annotation | ||
| IL_1P5M_029 | 6/A/19:20, 6/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_030 | 6/A/20:23, 6/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_1P5M_031 | 6/A/25:27, 6/A/34:36 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_1P5M_032 | 7/A/5:7, 7/A/50:51 | Single bulged U | geometric IL_8TQX_002 IL_97561.6 | |
| IL_1P5M_033 | 7/A/10:16, 7/A/46:47 | No text annotation | ||
| IL_1P5M_034 | 7/A/19:20, 7/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_035 | 7/A/20:23, 7/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_280D_001 NA | |
| IL_1P5M_036 | 7/A/25:27, 7/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1ZH5_001 IL_01003.5 | |
| IL_1P5M_037 | 8/A/5:7, 8/A/50:51 | No text annotation | ||
| IL_1P5M_038 | 8/A/10:16, 8/A/46:47 | No text annotation | ||
| IL_1P5M_039 | 8/A/19:20, 8/A/41:43 | No text annotation | ||
| IL_1P5M_040 | 8/A/20:23, 8/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_280D_001 NA | |
| IL_1P5M_041 | 8/A/25:27, 8/A/34:36 | Isolated non-canonical cWW pair | geometric IL_4KNQ_003 IL_01003.5 | |
| IL_1P5M_042 | 9/A/5:7, 9/A/50:51 | No text annotation | ||
| IL_1P5M_044 | 9/A/10:16, 9/A/46:47 | No text annotation | ||
| IL_1P5M_045 | 9/A/19:20, 9/A/41:43 | Single bulged U | geometric IL_4V9F_107 IL_97561.6 | |
| IL_1P5M_046 | 9/A/20:23, 9/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_1P5M_047 | 9/A/25:27, 9/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_01003.5 | |
| IL_1P5M_048 | 10/A/5:7, 10/A/50:51 | Single bulged U | geometric IL_2ZY6_002 IL_97561.6 | |
| IL_1P5M_049 | 10/A/10:16, 10/A/46:47 | No text annotation | ||
| IL_1P5M_050 | 10/A/19:20, 10/A/41:43 | Single bulged U | geometric IL_5J7L_298 NA | |
| IL_1P5M_051 | 10/A/20:23, 10/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_052 | 10/A/25:27, 10/A/34:36 | Isolated non-canonical cWW pair | geometric IL_4JGN_002 IL_01003.5 | |
| IL_1P5M_053 | 11/A/5:7, 11/A/50:51 | Single bulged U | geometric IL_1S03_005 IL_97561.6 | |
| IL_1P5M_054 | 11/A/10:16, 11/A/46:47 | No text annotation | ||
| IL_1P5M_055 | 11/A/19:20, 11/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_056 | 11/A/20:23, 11/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_057 | 11/A/25:27, 11/A/34:36 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_1P5M_058 | 12/A/5:7, 12/A/50:51 | Single bulged U | geometric IL_2ZY6_002 IL_97561.6 | |
| IL_1P5M_059 | 12/A/10:16, 12/A/46:47 | No text annotation | ||
| IL_1P5M_060 | 12/A/19:20, 12/A/41:43 | Single bulged U | geometric IL_3MEI_001 IL_97561.6 | |
| IL_1P5M_061 | 12/A/20:23, 12/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_062 | 12/A/25:27, 12/A/34:36 | Isolated non-canonical cWW pair | geometric IL_4JGN_002 IL_01003.5 | |
| IL_1P5M_063 | 13/A/5:7, 13/A/50:51 | Single bulged U | geometric IL_5TBW_086 NA | |
| IL_1P5M_064 | 13/A/10:16, 13/A/46:47 | No text annotation | ||
| IL_1P5M_065 | 13/A/19:20, 13/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_066 | 13/A/20:23, 13/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_067 | 13/A/25:27, 13/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_01003.5 | |
| IL_1P5M_068 | 14/A/5:7, 14/A/50:51 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_1P5M_069 | 14/A/10:16, 14/A/46:47 | No text annotation | geometric IL_2PN3_002 IL_78250.1 | |
| IL_1P5M_070 | 14/A/19:20, 14/A/41:43 | No text annotation | ||
| IL_1P5M_071 | 14/A/20:23, 14/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_7A0S_040 IL_71194.3 | |
| IL_1P5M_072 | 14/A/25:27, 14/A/34:36 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_1P5M_073 | 15/A/5:7, 15/A/50:51 | Single bulged U | geometric IL_1S03_005 IL_97561.6 | |
| IL_1P5M_074 | 15/A/10:16, 15/A/46:47 | No text annotation | ||
| IL_1P5M_075 | 15/A/19:20, 15/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_076 | 15/A/20:23, 15/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_077 | 15/A/25:27, 15/A/34:36 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_1P5M_078 | 16/A/5:7, 16/A/50:51 | No text annotation | ||
| IL_1P5M_079 | 16/A/10:16, 16/A/46:47 | No text annotation | ||
| IL_1P5M_080 | 16/A/19:20, 16/A/41:43 | Single bulged U | geometric IL_4WF9_088 IL_97561.6 | |
| IL_1P5M_081 | 16/A/20:23, 16/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_082 | 16/A/25:27, 16/A/34:36 | Isolated non-canonical cWW pair | geometric IL_4JGN_002 IL_01003.5 | |
| IL_1P5M_083 | 17/A/5:7, 17/A/50:51 | No text annotation | ||
| IL_1P5M_084 | 17/A/10:16, 17/A/46:47 | No text annotation | ||
| IL_1P5M_085 | 17/A/19:20, 17/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_086 | 17/A/20:23, 17/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_5TBW_129 NA | |
| IL_1P5M_087 | 17/A/25:27, 17/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_01003.5 | |
| IL_1P5M_088 | 18/A/5:7, 18/A/50:51 | Single bulged U | geometric IL_2ZY6_002 IL_97561.6 | |
| IL_1P5M_089 | 18/A/10:16, 18/A/46:47 | No text annotation | ||
| IL_1P5M_090 | 18/A/19:20, 18/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_091 | 18/A/20:23, 18/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_092 | 18/A/25:27, 18/A/34:36 | Isolated non-canonical cWW pair | geometric IL_6IA2_005 IL_01003.5 | |
| IL_1P5M_093 | 19/A/5:7, 19/A/50:51 | Single bulged U | geometric IL_6MWN_006 IL_97561.6 | |
| IL_1P5M_094 | 19/A/10:16, 19/A/46:47 | No text annotation | ||
| IL_1P5M_095 | 19/A/19:20, 19/A/41:43 | No text annotation | ||
| IL_1P5M_096 | 19/A/20:23, 19/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_097 | 19/A/25:27, 19/A/34:36 | Isolated non-canonical cWW pair | geometric IL_3SZX_003 IL_01003.5 | |
| IL_1P5M_098 | 20/A/5:7, 20/A/50:51 | Single bulged U | geometric IL_1S03_005 IL_97561.6 | |
| IL_1P5M_100 | 20/A/10:16, 20/A/46:47 | No text annotation | ||
| IL_1P5M_101 | 20/A/19:20, 20/A/41:43 | Single bulged U | geometric IL_4V88_414 NA | |
| IL_1P5M_102 | 20/A/20:23, 20/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_103 | 20/A/25:27, 20/A/34:36 | Isolated non-canonical cWW pair | geometric IL_2ZKO_001 IL_01003.5 | |
| IL_1P5M_104 | 21/A/5:7, 21/A/50:51 | No text annotation | ||
| IL_1P5M_105 | 21/A/10:16, 21/A/46:47 | No text annotation | ||
| IL_1P5M_106 | 21/A/19:20, 21/A/41:43 | Single bulged U | geometric IL_5TBW_086 NA | |
| IL_1P5M_107 | 21/A/20:23, 21/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_108 | 21/A/25:27, 21/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1T0E_002 IL_71625.4 | |
| IL_1P5M_109 | 22/A/5:7, 22/A/50:51 | No text annotation | ||
| IL_1P5M_110 | 22/A/10:16, 22/A/46:47 | No text annotation | geometric IL_2PN3_002 IL_78250.1 | |
| IL_1P5M_111 | 22/A/19:20, 22/A/41:43 | Single bulged U | geometric IL_6JQ5_003 IL_97561.6 | |
| IL_1P5M_112 | 22/A/20:23, 22/A/38:41 | Tandem non-canonical cWW pairs | geometric IL_3TZR_003 IL_71194.3 | |
| IL_1P5M_113 | 22/A/25:27, 22/A/34:36 | Isolated non-canonical cWW pair | geometric IL_1ZZ5_002 IL_01003.5 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1P5M_027 | Isolated non-canonical cWW pair | ||
| IL_1P5M_043 | Isolated non-canonical cWW pair | ||
| IL_1P5M_099 | Isolated non-canonical cWW pair |
Valid loops
No loops found
Problematic loops
No problematic loops
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