HL_1PJY_005

3D structure

PDB id

1PJY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of the HIV-1 frameshift inducing stem-loop RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CACAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1PJY_005 not in the Motif Atlas

Geometric match to HL_5J7L_179

Geometric discrepancy: 0.2675

The information below is about HL_5J7L_179

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

1PJY|5|A|C|9
1PJY|5|A|A|10
1PJY|5|A|C|11
1PJY|5|A|A|12
1PJY|5|A|A|13
1PJY|5|A|G|14

Current chains

Chain A

HIV-1 frameshift inducing stem-loop

Nearby chains