HL_1Q7Y_007

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

CGCAAUG

Length

7 nucleotides

Bulged bases

1Q7Y|1|A|C|197, 1Q7Y|1|A|U|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q7Y_007 not in the Motif Atlas

Homologous match to HL_4V9F_007

Geometric discrepancy: 0.0731

The information below is about HL_4V9F_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36488.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1Q7Y|1|A|C|195
1Q7Y|1|A|G|196
1Q7Y|1|A|C|197
1Q7Y|1|A|A|198
1Q7Y|1|A|A|199
1Q7Y|1|A|U|200
1Q7Y|1|A|G|201

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain M

50S ribosomal protein L15P

Chain N

L15 Ribosomal Protein