HL_1Q7Y_010

3D structure

PDB id

1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

1Q7Y|1|A|C|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q7Y_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0485

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

22

Unit IDs

1Q7Y|1|A|U|312
1Q7Y|1|A|U|313
1Q7Y|1|A|G|314
1Q7Y|1|A|G|315
1Q7Y|1|A|A|316
1Q7Y|1|A|A|317
1Q7Y|1|A|C|318
1Q7Y|1|A|A|319

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L4E

Chain U

50S ribosomal protein L24P

Chain Z

50S ribosomal protein L32E