HL_1Q7Y_012
3D structure
- PDB id
- 1Q7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of CCdAP-Puromycin bound at the Peptidyl transferase center of the 50S ribosomal subunit
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.2 Å
Loop
- Sequence
- GUGACAACC
- Length
- 9 nucleotides
- Bulged bases
- 1Q7Y|1|A|G|336, 1Q7Y|1|A|A|337, 1Q7Y|1|A|C|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1Q7Y_012 not in the Motif Atlas
- Homologous match to HL_4V9F_012
- Geometric discrepancy: 0.0641
- The information below is about HL_4V9F_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.3
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 15
Unit IDs
1Q7Y|1|A|G|334
1Q7Y|1|A|U|335
1Q7Y|1|A|G|336
1Q7Y|1|A|A|337
1Q7Y|1|A|C|338
1Q7Y|1|A|A|339
1Q7Y|1|A|A|340
1Q7Y|1|A|C|341
1Q7Y|1|A|C|342
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain E
- 50S ribosomal protein L4E
- Chain U
- 50S ribosomal protein L24P
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