HL_1Q81_038

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GCAUCGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q81_038 not in the Motif Atlas

Homologous match to HL_4V9F_038

Geometric discrepancy: 0.1404

The information below is about HL_4V9F_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1Q81|1|A|G|1557
1Q81|1|A|C|1558
1Q81|1|A|A|1559
1Q81|1|A|U|1561
1Q81|1|A|C|1562
1Q81|1|A|G|1563
1Q81|1|A|C|1564

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain Q

50S ribosomal protein L19E